Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F001297925.1_202015-09-23] 22,458 sequences; 57,457,034 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq14466 228 1e-54 seq1053 210 3e-49 seq22165 170 2e-37 >seq14466 Length=3412 Score = 228 bits (252), Expect = 1e-54 Identities = 585/881 (66%), Gaps = 26/881 (3%) Strand=Plus/Minus Query 62943 ATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTT 63002 || |||||| ||| | ||| || ||||| ||||| | || | ||| || ||||| Sbjct 1941 ATAATCTCACAGCACAAATTGGAACTTTTGATGGTTCCGAGGTTCTTTTGGTTGCTCTTG 1882 Query 63003 TTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATA 63062 |||| ||||||||| | ||| ||||||| |||||||| || || ||||| ||| Sbjct 1881 CTGTTGGCGTGATCCTTATACAACATGTATGGAGTTCCAGTTTCGATTTGTGATTCAATA 1822 Query 63063 ATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATC--TCCTTTCTCTTTCGT 63120 || |||| ||| | | |||| || ||| | ||| || | | | || | || | Sbjct 1821 ATGGCTTCCCAAAGTTTTTGAGCTTTCATTGTC--TTTCTACCAATTCCTTATTGCTCAT 1764 Query 63121 A--TAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAAT----CCAGGAC 63174 | ||||||| || | |||||| || | || ||| ||| || || | | Sbjct 1763 ACTTAGTGTA--CAGTGCTTCGAATTCTTAACCATGAAC---GTCGAAGAGGCCCTTGGC 1709 Query 63175 ATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGAT 63234 ||| | || || | | | ||| ||||||||| | | |||| ||||| || | | Sbjct 1708 -TTCGTTGGGGCAGAAAAGTGTCCAGTCTCCGTCAGCTTGGACTCTCTTCATGAATAAGT 1650 Query 63235 CAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCT 63294 | |||||||| ||||| | || | ||||| | ||| |||||||| || || ||||| Sbjct 1649 CTGGAATCCAGAGAGCGAAGAACAAGTCTCTTGCTCTTTGTTCCTCTTTACCGTGATTCT 1590 Query 63295 TTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAA 63354 || | || | ||||| | | | ||| | ||||| |||||||||||||| || | Sbjct 1589 TTCTTAGTTGAAGGAAATCGAAGACATCTGCGTGCCATGGTTCCAAGTATATAGCGAATG 1530 Query 63355 CTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCA 63414 || | ||| ||||| || || | |||||||| || | ||| ||||||| | Sbjct 1529 AACCCTTTCTCTTGCCACCTCCTTGGTCGACATATCTAGCAGTCTCATTGAAAACTCTGA 1470 Query 63415 ACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCAC 63474 |||||| | | || || ||||||||| || ||| || || ||| | || | Sbjct 1469 GCATTGGCACGAGGCCATTACTGTGACCATTGGTGCCCTTGATGTAACTGCCAGTAGCTC 1410 Query 63475 GAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTT 63534 || || || | ||||| | || || || ||| || || | |||| || | Sbjct 1409 TGATGTTGTGAACAGCCAGACCCACACCACCAGCTGATTTTGAAATCAGTGCG-ATGTTC 1351 Query 63535 TTAACG-TGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTA 63593 || | | | ||||||||||| | || || || |||| |||| || || || || Sbjct 1350 TTGAGGGTATCATAGATACCGTTGATTGAGTCGTCCTTCATCATAAGGAGGAAGCAACTG 1291 Query 63594 GACATTTGGTGACGACT----AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAA 63649 ||||||| | | || |||||| ||||| || || ||||||| ||| || ||||| Sbjct 1290 GACATTT----ATGGCTTGGGAGTTCCAGCATTGAACAAAGTAGGAGTAGCATGAGTAAA 1235 Query 63650 CCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAAT 63709 |||| | ||| | || ||||| || ||||| ||||| || |||||| | || || Sbjct 1234 CCATCTGTCACTCATGAGGTTGTAAGTTTCAATGGCTGAATCGATATCCTTCTTGTGGAT 1175 Query 63710 TCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTT 63769 ||||| | || | ||| ||||||||||| ||||| ||||||||||| || | || Sbjct 1174 ACCTACAGACACTCTCATCAACATGTGCTGTGGTCTCTCAACGATCTTAGAATTGACCTT 1115 Query 63770 CAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGT 63810 || ||||||||| | ||||| || ||||| || ||||||| Sbjct 1114 TAATAAGTAGGATCTCTCCAAGGTCTTAAATCCGAAATAGT 1074 >seq1053 Length=3228 Score = 210 bits (232), Expect = 3e-49 Identities = 736/1123 (66%), Gaps = 42/1123 (4%) Strand=Plus/Minus Query 62712 GCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTC- 62770 || || || ||||||| |||||||| || || ||||| ||||| ||| || ||||| Sbjct 1936 GCATCTGCAAATCCTTAGACACCAATTCCAATTGGTCTGTGTCTAAGATTTGA-ATTTCT 1878 Query 62771 AGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTAC 62830 |||||| |||| |||||| ||||| |||||||||||||||| ||||| | |||| Sbjct 1877 AGCTTCAGGAACAGGATAGTAATTGTTATCTATAATTTTATTTAGATTCTTAGTAATTCT 1818 Query 62831 TTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCC------CATCTATTACAAACAT 62884 ||| ||| | | | || | ||||| || | | || || || | Sbjct 1817 CTTGGTCACGTAATGTAACTTCTCATAATCATATTCTTAGGTTTCCTTTAACACGAATCT 1758 Query 62885 GTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTAT 62944 || || |||| ||| || || ||||| || || || |||| | | | | ||| | Sbjct 1757 ATTTAAAGCAATAGAAGCTAGGTTACAGACAGCCACTTCATCGGGACTGGTAAATTCGAC 1698 Query 62945 TATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTT 63004 |||||||||||||| ||| || ||| || || || | ||||| | ||| ||| | Sbjct 1697 GATCTCAGTGCAAAGGTTAGAACTCTTAATTGTGCCAAGATTTTACTAGTTAGATTTTCT 1638 Query 63005 GTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAAT 63064 || || ||||| || || || || | ||||||||||| || | ||||| ||||| || Sbjct 1637 ATTGCAAGCATCTTTGTAGAGCATATAAGGAGTACCAGTCTCGTTTTGAGACTCTATGAT 1578 Query 63065 CGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCCTTTCTCTT-TCGTATA 63123 ||||| || |||||| | || |||| | || | | || ||| Sbjct 1577 TTAACCCCAGAGCCATCTAGCCTTAAC---AGTTTTGCGACCTCTACCAGTGGTCTCATA 1521 Query 63124 GTGTATACAATCGTTCG--AACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATC 63181 | || || ||| ||||| || ||||| | | | ||| || ||||||| Sbjct 1520 CTCGATGTAAAGTTTCTCAAACTCCTCACCCCATGTAGTAGTAAGTCCTGGGCATTCATT 1461 Query 63182 CGGACACATCAACGACCACTCTCCGTCATCCTTCA-CTCGTTTCATAAAGAGATCAGGAA 63240 |||||||||| | ||| ||| | | | ||||| ||| | |||| || ||||| ||| Sbjct 1460 TGGACACATCAGAGTCCAATCTTCATT-TGCTTCAACTCTTCTCATGAAAAGATCTGGAG 1402 Query 63241 TCCAAAGAGC-TATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTA 63299 |||||||||| || ||| || ||||| | ||||| || || || || ||||||| || Sbjct 1401 TCCAAAGAGCGTAGAAA-AGGTCTCTAGCTCTATTCTCTTCCTTACCGTGATTCTTTCTA 1343 Query 63300 AGATCGAGGAACGCCATA-ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCC 63358 || | ||||| | | || ||||||| ||||| ||||| | || | || | | |||| Sbjct 1342 AGTTAAAGGAA-GTCGTAGATATCAGCGTGCCATGGTTCAACATAGACAGCGAAAGCTCC 1284 Query 63359 AGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACAT 63418 | ||| || || | ||| | |||||| ||||||| ||| | || ||||||| Sbjct 1283 CTTTCTTTTTCCACCACCTTAATCGACGTATCTTGCGGTGTCATTGAAGACCTTCAACAT 1224 Query 63419 TGGAATAATACCGTTTG-ATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAA 63477 |||||| | || |||| |||| || || ||||| ||| ||| || || | || Sbjct 1223 TGGAATCAATCCATTTGAATAT-CCGTTTGTACCTCTGATGTAGGAGTCAGCAGCTCTAA 1165 Query 63478 TATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTA 63537 || | ||| | || || || || || || ||||| | || | ||||| Sbjct 1164 CATCGGACACTGACACTCCGATACCACCAGCAGCCTTTGAGATAATAGCAATTTATTTTA 1105 Query 63538 ACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTA-AG-TAGAAAACAGCTAGA 63595 | || ||| ||||||| || ||| || || | ||| || ||| || ||| ||| Sbjct 1104 AAGTTTCAAAGATACCATCAATGGAGTCTTC-----TTTTACAGTTAGCAAGAAGCAAGA 1050 Query 63596 ---CA--TTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 63650 || | |||| | ||||| | ||||| | ||||||| || || |||||| Sbjct 1049 ACTCATCTATGGTTTTG--GTGTTCCAGAGTTAAACAGAGTAGGAGTGGCATGAGTAAAC 992 Query 63651 CATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATT 63710 || || | | | || ||| ||||| | ||||| || | || || |||||| Sbjct 991 CACAGTTGACTCATCAAATCGTAAGTCTCGAACGCTGACTCAAGGTCTTCTTTATGAATA 932 Query 63711 CC--TACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTT 63768 || |||| || | ||| | |||||| || ||||| |||| ||| | |||| || | Sbjct 931 CCAATACT--TACTCTCATAAGCATGTGTTGTGGTCTCTCAAGGATTTGGTTG-CCATCT 875 Query 63769 TCAACAA-GTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGT 63810 | || || ||| | | ||||||| ||| | ||||||||||||| Sbjct 874 TTAAGAAGGTAAGCTCTTTCCAATGTTCTGAAACCAAAATAGT 832 >seq22165 Length=1746 Score = 170 bits (188), Expect = 2e-37 Identities = 391/581 (67%), Gaps = 6/581 (1%) Strand=Plus/Plus Query 33319 TGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCA 33378 |||| ||| |||||||| ||| || || || || || ||||| || ||||| |||||| Sbjct 605 TGCATACCTTCGTCTCTTGAAATGAGCTCATTTGAGAAGGTGAGACCTGGCATGAGGCCA 664 Query 33379 CGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCA 33438 ||||| |||||||| || || || ||| ||||| || |||||||| || || | ||| Sbjct 665 CGCTTCTTAAGCCAGAAGATTGAGCAGAAGGATCCTGAGAAGAAGATGCCCTCGATGGCA 724 Query 33439 GCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGTATCCACTTTTGAGCCCAA 33498 || || ||||| |||||||| | | | ||||| ||| |||||||| ||||| Sbjct 725 GCGAAAGCAATTAGTCTCTCAGCGAAGCTAGCGCTCTCACCAATCCACTTAATGGCCCAT 784 Query 33499 TCGGCCTTCTTTTTTACACAAGGCATCGTTTCT-ATGGCATTAAAGAGATAGtttttttC 33557 || |||||||| ||||| || || ||| | ||||| || ||||| | | || || Sbjct 785 TCAGCCTTCTTAGTTACAACTGGGAT-GTTAGTGATGGCTTTGAAGAGGAACTCCTTCTC 843 Query 33558 ATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTC 33617 | || | | || ||||| | | || | || || |||||||| || Sbjct 844 GTGTGGGTCACTGATGAGGGTGTCGATGAGTACTGAGTAAGTCTCTGAGTGAATGTTCTC 903 Query 33618 AATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAA 33677 || ||| || || || |||||||| | || || | || || | ||| ||||| || Sbjct 904 CATCATCATTTGGAAGCCATAGAAACAGCGTGCTTCTGGAACTTGGATTTCAGTACAGAA 963 Query 33678 TCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATG 33737 || | || | || || || || |||||||| ||| || || || || | || || Sbjct 964 TCTCTGGGCGAGGTTCTCGTTGACGATTCCGTCTGAGGCAGCGAAGAAAGCAAGGACGTG 1023 Query 33738 TTTTATAAAATATTTTTCGTCTGGTGTT-AGTTTATTCCAATCATTGATATCTTTAGATA 33796 || ||||| | | | |||| || || ||| | | |||||| || | ||| | | | Sbjct 1024 CTTGATAAAGTGTCTCTCGT-TGTCATTGAGTCTCTCCCAATCTTTAACATCAGTGGCGA 1082 Query 33797 TATCTACTTCTTCCACTGTCCAAAATGATGCC-TCTGCCTTTTTATACATGTTCCAGATG 33855 || | ||| || ||||| || | ||| |||| | || ||||| ||||||||| Sbjct 1083 GGTCGATTTCCTCAGAGGTCCAGAAAGCAGCCATCTG-GTCCTTGTACATCTTCCAGATG 1141 Query 33856 TCATAATATTGGATTGGGAAAATAACAAATCTATTTGGATT 33896 || | || | |||||| | ||||||||||| ||||| || Sbjct 1142 TCGTTGTACTTGATTGGAAGGATAACAAATCTGTTTGGGTT 1182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622772323147280