Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F001297925.1_202015-09-23] 22,458 sequences; 57,457,034 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq14466 199 1e-45 seq4291 156 1e-32 seq1053 149 2e-30 >seq14466 Length=3412 Score = 199 bits (220), Expect = 1e-45 Identities = 623/954 (65%), Gaps = 8/954 (1%) Strand=Plus/Plus Query 363379 GAGTATGATATTTTCGGATATAAGACGATGGAGAAATCCTACCTATCTCGTATCAATGGT 363438 || ||||| |||||||| |||||| |||||| ||||||| ||| ||||| | Sbjct 1067 GACTATGACTATTTCGGATTTAAGACCTTGGAGAGATCCTACTTATTAAAGGTCAATTCT 1126 Query 363439 GATATTGTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCG 363498 | || ||||| | || ||||| ||||| ||| | || || | |||||||| | Sbjct 1127 AAGATCGTTGAGAGACCACAGCACATGTTGATGAGAGTGTCTGTAGGTATCCACAAGAAG 1186 Query 363499 GATGTTGATGCCGCGATTGAAACATATAAGCTTCTAAGTGCTCGTGTATTCACGCACGCC 363558 ||| | ||| | || |||||||| || || || | |||| | || || || || Sbjct 1187 GATATCGATTCAGCCATTGAAACTTACAACCTCATGAGTGACAGATGGTTTACTCATGCT 1246 Query 363559 ACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTA 363618 || || || ||| |||||||||||||| || ||| | ||||| |||||| || || Sbjct 1247 ACTCCTACTTTGTTCAATGCTGGAACTCCCAAGCCATAAATGTCCAGTTGCTTCCTCCTT 1306 Query 363619 AAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATT 363678 | ||||||||||| || ||| | ||||||| ||| || || ||||| || || ||| Sbjct 1307 ATGATGAAGGACGACTCAATCAACGGTATCTATGATACCCTCAAGAACATCGCACTGATT 1366 Query 363679 TCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC-ACAGAACAGTTA 363737 || || || || || | ||| | | | ||||| | | || || | |||||| Sbjct 1367 TCAAAATCAGCTGGTGGTGTGGGTCTGGCTGTTCACAACATCAGAGCTACTG-GCAGTTA 1425 Query 363738 CATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAA 363797 ||| ||||| || || ||||| || || || ||||| | || || | | Sbjct 1426 CATCAAGGGCACCAATGGTCACAGTAATGGCCTCGTGCCAATGCTCAGAGTTTTCAATGA 1485 Query 363798 TACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCT 363857 ||||| || || |||||||| || || || ||| | || || | || ||||| || | Sbjct 1486 GACTGCTAGATATGTCGACCAAGGAGGTGGCAAGAGAAAGGGTTCATTCGCTATATACTT 1545 Query 363858 CGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAA-AAACACGGGAAAAG 363916 || || || || ||| | || || || ||| | || | || || ||| || |||| Sbjct 1546 GGAACCATGGCACGCAGATGTCTTCGATTTCCTTCAACTAAGAAAGAATCAC-GGTAAAG 1604 Query 363917 AGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGC 363976 ||||| | ||| | || |||||| || || ||| || | ||| || |||||| Sbjct 1605 AGGAACAAAGAGCAAGAGACTTGTTCTTCGCTCTCTGGATTCCAGACTTATTCATGAAGA 1664 Query 363977 GCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCA-GGTCTTTCC 364035 | || | || | | ||| |||| || ||||| ||||| | | | || || | | Sbjct 1665 GAGTCCAAGCTGACGGAGACTGGACACTTTTCTGCCCCAACGAA-GCCAAGGGCCTCTTC 1723 Query 364036 GATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCT 364095 || || ||| | || | | || || ||| |||||||| | |||| | | Sbjct 1724 GACGTTCATGGTTAAGAATTCGAAGCACTGTACACTAAGTATGAGCAATAAGGAATTGGT 1783 Query 364096 CGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACA 364155 | |||||||| || || || || ||| ||||| || || || || || || || Sbjct 1784 AGAAAGACAATGAAAGCTCAAAAACTTTGGGAAGCCATTATTGAATCACAAATCGAAACT 1843 Query 364156 GGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTT 364215 ||||| || || |||||||| || ||| |||| ||||| |||||| || |||| Sbjct 1844 GGAACTCCATACATGTTGTATAAGGATCACGCCAACAGCAAGAGCAACCAAAAGAACCTC 1903 Query 364216 GGTACAATTCAGCAG-AGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGA 364274 || || | ||| || ||| | || |||||||| || |||||| | || || || Sbjct 1904 GGAACCA-TCAAAAGTTCCAATTTGTGCTGTGAGATTATCGAGTACACCTCACCAGATGA 1962 Query 364275 GACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGTAAAAGATGG 364328 || || || |||||||| || || | || || | |||||| ||||| Sbjct 1963 AGTAGCTGTTTGCAACCTTGCTTCCATATCTCTACCTAGATATGTAAAGGATGG 2016 >seq4291 Length=4287 Score = 156 bits (172), Expect = 1e-32 Identities = 403/602 (67%), Gaps = 23/602 (4%) Strand=Plus/Plus Query 111314 TTTTCCACTTCTCACAACAAAGCGAACATAT-TGGAAGGGAATTGTCGAAGAACTTCTGT 111372 ||| ||| ||||||| || || || | | |||| ||| | | || |||||| | | Sbjct 951 TTTCCCAATTCTCACTACCAAA-GATGTTTTCTGGAGAGGAGTAGCTGAGGAACTTGTTT 1009 Query 111373 GGTTTATTCGCGGAAGTACAAATGCAAATGAACTT-GCAGCAAAAAATGTAAAAATTTGG 111431 ||||| || || ||||||||| || |||||| || | ||||| | | ||||||| Sbjct 1010 GGTTTGTTAAGGGCGATACAAATGCCAA-GAACTTAGCCGACAAAAAGATCAGAATTTGG 1068 Query 111432 GATGGAAATGGATCACGTGACTTTCTAGATTCAGTTGGTCTTGTC-GACAACGAAGAAGG 111490 || || |||| ||| | | || || || || | || |||| || | ||||| | Sbjct 1069 GACGGTAATGCCTCAAGATAGTTCCTTGACTCTATCGG-CTTGAAAGATAGAGAAGAGTG 1127 Query 111491 TGATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCAGACTACAAAACCAT 111550 |||||||| ||||| || || || ||||| | |||||||| || | || |||| || Sbjct 1128 GGATCTCGGGCCAGTCTATGGGTTCTAATGGAGACACTTTGGAGCTGCTTATGAAACAAT 1187 Query 111551 GCACGACTCATATGATT-CACAGGGAACTGATC-----AATTACAGAATGTCATTGATCA 111604 ||||||| |||| |||||| || ||| |||| | |||||| |||| Sbjct 1188 GCACGAC------GATTACACAGGAAAAGGATTTGACTAATTGGCTGACGTCATTAATCA 1241 Query 111605 AATTAAGAACAACCCAACTTCTCGTCGCATTATTATGAGTGCATGGAACCCAAATGCATT 111664 | |||||||| ||||| | | ||| | |||||||| |||||| | || | Sbjct 1242 GTTGAAGAACAATCCAACCAGCAGAAGAATTGTGATGAGTGCTTGGAACGCTGCTGATCT 1301 Query 111665 GGAAAAAATGGCACTTCCACCATGTCATCTTATGTGCCAGTTTTATGTACACG---ACGG 111721 |||| ||||| ||||| || || || || | | |||||||| | | || Sbjct 1302 TAAAAACATGGCTCTTCCTCCCTGCCACATTTTAGCTTAATTTTATGTTTCTGCTGATGG 1361 Query 111722 GATGCTTTCATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAA 111781 | |||||| |||||||||||||| ||||| |||||| ||||||||| |||| || || Sbjct 1362 AAAGCTTTCCTGCCAAATGTATCAAAGATCTTGTGATATGGGTCTTGGTATTCCTTTCAA 1421 Query 111782 TATTGCAAGTTACGCACTACTTACTTGCTTAATCGCTC-ATTTTACAAATCTCAAACCGG 111840 ||||| ||||| || | | || ||| | | || | | | | | || | || | Sbjct 1422 CATTGCGAGTTATTCATTGTTAACCTGCATGCTTGCACAAGTGTGCGGAT-TGAAGAGAG 1480 Query 111841 GTGAATTCATTCACGTTATCGGAGATGCGCATGTTTACACAAACCACATTGATGCACTTA 111900 | || |||||||| || | || ||||| ||||| || | ||| || |||| ||||| Sbjct 1481 GAGAGTTCATTCATGTATTAGGTGATGCTCATGTATATAAAAATCATGTTGAACCACTTC 1540 Query 111901 AA 111902 || Sbjct 1541 AA 1542 >seq1053 Length=3228 Score = 149 bits (164), Expect = 2e-30 Identities = 499/764 (65%), Gaps = 12/764 (2%) Strand=Plus/Plus Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 || || || ||||| || || ||| || ||||||| | || ||| ||||| |||| Sbjct 993 TTTACTCATGCCACTCCTACTCTGTTTAACTCTGGAACACCAAAACCATAGATGAGTTCT 1052 Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 ||||| | |||| | || || || ||||| || ||||||||||| || | || | Sbjct 1053 TGCTTCTTGCTAACTGTAAAAGAAGACTCCATTGATGGTATCTTTGAAACTTTAAAATAA 1112 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCA 363726 |||| |||| || ||| ||| || || || || || || | | ||||| | || Sbjct 1113 ATTGCTATTATCTCAAAGGCTGCTGGTGGTATCGGAGTGTCAGTGTCCGATGTTAGAGCT 1172 Query 363727 CAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGT 363786 || ||||| | || ||| ||||| || ||||| || |||| ||| | Sbjct 1173 GCTGACTCCTACATCAGAGGTACAAACGGATATTCAAATGGATTGATTCCAATGTTGAAG 1232 Query 363787 GTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTT 363846 || || | | || || || |||||||| | ||||| ||||| | || || || || Sbjct 1233 GTCTTCAATGACACCGCAAGATACGTCGATTAAGGTGGTGGAAAAAGAAAGGGAGCTTTC 1292 Query 363847 GCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAA-AAA 363905 ||| | ||| | || || || || ||||| | || || ||| | || | || || Sbjct 1293 GCTGTCTATGTTGAACCATGGCACGCTGATATCTACGACTTCCTTTAACTTAGAAAGAAT 1352 Query 363906 CACGGGAA--AAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGAC 363963 ||||| || |||| |||| | || | || || ||||| || |||||| | | || Sbjct 1353 CACGGTAAGGAAGA-GAAT--AGAGCTAGAGACCTTTTCTACGCTCTTTGGACTCCAGAT 1409 Query 363964 CATTTTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGT 364023 | ||| |||| | || || ||| | | ||||| | || | || ||| | ||||| Sbjct 1410 CTTTTCATGAGAAGAGTTGAAGCAAATGAAGATTGGACTCTGATGTGTCCAAATGAATGC 1469 Query 364024 CCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGA-ATC 364082 ||||| ||| | | ||||||||| || | || || ||| ||||||| | | Sbjct 1470 CCAGGACTTACTACTACATGGGGTGAGGAGTTTGAGAAACTTTACATCGAGTATGAGACC 1529 Query 364083 GGAGGGAAAGGCTCGTAAGACAATTCCCGCACAGA-AGCTATGGTTTGCCATCATGGATT 364141 || | ||| ||| || || || || ||| ||| ||| | ||||| || | Sbjct 1530 ACTGGTAGAGG-TCGCAAAACTGTTAAGGC-TAGATGGCTCTGGGGTTAAATCATAGAGT 1587 Query 364142 CGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCA 364201 | || | ||||| || || || |||||| | ||||||||| | ||||| | || || | Sbjct 1588 CTCAAAACGAGACTGGTACTCCTTATATGCTCTACAAAGATGCTTGCAATAGAAAATCTA 1647 Query 364202 ACCAGCAGCACCTTGGTACAATTCAGCAGAGC-AACCTATGTACCGAGATTATTGAATAC 364260 || || | | ||||| |||||| || || | ||||| || || ||||| | |||| Sbjct 1648 ACTAGTAAAATCTTGGCACAATTAAG-AGTTCTAACCTTTGCACTGAGATCGTCGAATTT 1706 Query 364261 ACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGC 364304 ||| |||||| || || || |||||||| || || || || Sbjct 1707 ACCAGTCCCGATGAAGTGGCTGTCTGTAACCTAGCTTCTATTGC 1750 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1302978568962156