Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F001297925.1_202015-09-23] 22,458 sequences; 57,457,034 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq14202 138 1e-27 seq18203 131 1e-25 seq533 91.5 1e-13 >seq14202 Length=1113 Score = 138 bits (152), Expect = 1e-27 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || || || | || ||||| | || ||| | || |||||| ||| | Sbjct 426 ATGCAAATCTTCGTTAAGACCCTTACCGGAAAGACCATCACCCTTGACGTCGAG-CCATC 484 Query 24051 -GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 |||||||| || | || || |||||| || |||||||| || || |||||||| Sbjct 485 AGACACCATTGAAAACGTTAAGGCAAAGATCCAAGATAAAGAAGGTATCCCACCCGATCA 544 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||| ||||| || | || |||||||||||| ||||||| |||| | | || || || Sbjct 545 ACAAAGACTTATCTTCGCCGGCAAGCAACTTGAAGATGGAAGAACCCTTTCAGACTACAA 604 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||||||||||||||||| |||| || || | |||||||||||||| Sbjct 605 TATTCAAAAAGAATCTACCCTTCACTTGGTTCTTAGATTGAGAGGAGG 652 Score = 109 bits (120), Expect = 5e-19 Identities = 125/168 (74%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||||||||||||| | |||||| ||||| ||||| ||||| || || |||||||| Sbjct 713 CGACACCATCGAGAATGTCAAAGCCAAGATCCAGGACAAGGAAGGTATTCCACCCGATCA 772 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||| ||||| || | || ||| || ||||| ||||| | ||||| | ||||| || || Sbjct 773 ACAAAGACTCATCTTCGCCGGTAAACAACTTGAAGACGGCAGAACTTTGAGCGACTACAA 832 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||| ||||| || ||||| | || || || | ||| | ||||| || Sbjct 833 CATCCAAAAGGAGTCTACTCTCCACTTGGTCCTCAGACTTAGAGGTGG 880 Score = 102 bits (112), Expect = 7e-17 Identities = 166/235 (71%), Gaps = 3/235 (1%) Strand=Plus/Plus Query 23985 AACAAA-ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGA 24043 |||||| ||| || | || || || || | ||||| || | || || | || || || Sbjct 191 AACAAACATGTAAATTTTCGTTAAGACTCTCACTGGCAAGACCATCACTCTTGATGTTGA 250 Query 24044 GGCCAAC-GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTC 24102 | ||| | || ||||| || | ||||| ||||| |||||||| || || || | Sbjct 251 G-CCATCAGATACCATTGAAAATGTCAAGGCTAAGATCCAAGACAAAGAGGGAATCCCAC 309 Query 24103 CCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCG 24162 |||||||||||||||| |||| || || ||||| | ||||| | ||||| | || || Sbjct 310 CCGATCAACAGAGACTCATTTTCGCTGGAAAGCAGTTGGAAGACGGCAGAACCCTCTCCG 369 Query 24163 ATTATAACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 | || ||||| || || || || || |||| || || || ||| | |||||||| Sbjct 370 ACTACAACATCCAGAAGGAGTCAACCCTTCACTTGGTCTTGAGACTCAGAGGAGG 424 >seq18203 Length=1365 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || || || | || ||||| | || ||| | || |||||| | Sbjct 634 ATGCAAATCTTCGTCAAGACCCTTACCGGAAAGACCATCACCTTGGACGTCGAGCCTTCA 693 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || ||||| ||| | ||||| |||||| ||||| ||||| || || ||||||||| Sbjct 694 GATACCATTGAGAATGTCAAGGCAAAGATCCAAGACAAGGAAGGTATCCCACCCGATCAA 753 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || ||||| || | || ||| |||||||| ||||||| ||||| | || || ||| Sbjct 754 CAAAGACTCATCTTCGCCGGAAAGCAACTTGAAGATGGCAGAACTCTTTCAGACTACAAC 813 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 || || ||||||||||| ||||||| || | ||||||||||| || Sbjct 814 ATCCAGAAAGAATCTACTCTTCATTTGGTCCTCAGATTGAGAGGTGG 860 Score = 109 bits (120), Expect = 5e-19 Identities = 166/235 (71%), Gaps = 1/235 (0%) Strand=Plus/Plus Query 23984 AAACAAA-ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCG 24042 ||| ||| |||||| | || || || || | || || || | || || | || || | Sbjct 170 AAATAAACATGCAAATCTTCGTTAAGACCCTCACAGGCAAGACCATCACTTTGGACGTTG 229 Query 24043 AGGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTC 24102 || || ||||||||||| | ||||| ||||| ||||| ||||| || || | Sbjct 230 AGCCCTCTGACACCATCGAAAATGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCAC 289 Query 24103 CCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCG 24162 |||||||||| ||||| || | || ||||||||||||||||| | |||| | | || Sbjct 290 CCGATCAACAAAGACTCATCTTCGCTGGCAAGCAACTCGAAGACGGAAGAACCTTGTCCG 349 Query 24163 ATTATAACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 | || ||||| || || ||||| || |||| || || | ||| | |||||||| Sbjct 350 ACTACAACATCCAGAAGGAATCAACCCTTCACTTGGTTCTCAGACTCAGAGGAGG 404 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || || || | |||||||| | || || | || || ||| ||| | Sbjct 406 ATGCAAATCTTCGTGAAGACCCTCACTGGAAAGACCATCACTTTGGACGTTGAG-CCATC 464 Query 24051 -GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||||| || || | ||||| ||||| || || ||||| || || |||||||| Sbjct 465 AGACACTATTGAAAACGTCAAGGCCAAGATCCAAGATAAGGAAGGTATTCCCCCCGATCA 524 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||| ||||| |||| | || |||||||| ||||||| |||| | | || || || || Sbjct 525 ACAAAGACTCATTTTTGCTGGAAAGCAACTTGAAGATGGAAGAACCCTTAGTGACTACAA 584 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||| ||||| || || || |||| || || | ||||||||||| || Sbjct 585 CATCCAAAAGGAGTCAACCCTTCACTTGGTCCTCAGATTGAGAGGTGG 632 Score = 98.7 bits (108), Expect = 9e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || || || | || ||||| | || ||| |||| || ||| ||| | Sbjct 862 ATGCAAATCTTCGTCAAGACCCTCACCGGAAAGACCATCACCCTCGATGTTGAG-CCATC 920 Query 24051 -GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 |||||||| || | || || ||||| ||||| ||||| || || |||||||| Sbjct 921 AGACACCATTGAAAACGTGAAGGCCAAGATCTAGGACAAGGAAGGTATCCCACCCGATCA 980 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||| ||||| || | || || |||||||| ||||| | ||||| | | ||| || || Sbjct 981 ACAAAGACTTATCTTCGCTGGTAAGCAACTTGAAGACGGCAGAACCTTGTCCGACTACAA 1040 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||| ||||| || || || | || || || | ||| | ||||| || Sbjct 1041 CATCCAAAAGGAGTCAACTCTCCACTTGGTCCTCAGACTTAGAGGTGG 1088 >seq533 Length=4588 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 |||||| | | || || || || || || || || | ||||| | || || ||| | Sbjct 4446 AAAATGTAGATCTTCGTCAAGACTTTGACCGGTAAGACTATTACTCTTGATGTAGAGCCT 4387 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 || |||||||| | || || |||||| ||||||||||| || || || ||| Sbjct 4386 TCTGATACCATCGAAAACGTTAAGGCCAAGATTCAAGACAAAGAAGGTATTCCCCCTGAT 4327 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTAT 24167 ||||||||||| || | | || ||| | | ||||| | ||||| | | ||||| Sbjct 4326 CAACAGAGACTCATCTTTGCTGGAAAGTAGTTGGAAGACGGCAGAACCTTGTCTGATTAC 4267 Query 24168 AACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||||| ||||||||||| || | || || || || ||| | ||||| || Sbjct 4266 AACATCCAAAAAGAATCAACTCTCCACTTGGTCTTGAGACTTAGAGGTGG 4217 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429818323560990