Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F001297925.1_202015-09-23] 22,458 sequences; 57,457,034 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq14202 107 2e-18 seq18203 98.7 8e-16 seq2220 89.7 4e-13 >seq14202 Length=1113 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||| || || || || || || ||||| ||||| ||| | || ||| ||| | Sbjct 426 ATGCAAATCTTCGTTAAGACCCTTACCGGAAAGACCATCACCCTTGACGTCGAG-CCATC 484 Query 115346 -GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||||| ||| | | || || ||| || ||||||||||| |||| ||||| Sbjct 485 AGACACCATTGAAAACGTTAAGGCAAAGATCCAAGATAAAGAAGGTATCCCACCCGATCA 544 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||||||||||| | || ||||| ||| | ||||||| | |||| | | || || || Sbjct 545 ACAAAGACTTATCTTCGCCGGCAAGCAACTTGAAGATGGAAGAACCCTTTCAGACTACAA 604 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 ||||||||||| ||||| | || |||| | |||||| ||||||| Sbjct 605 TATTCAAAAAGAATCTACCCTTCACTTGGTTCTTAGATTGAGAGGAGG 652 >seq18203 Length=1365 Score = 98.7 bits (108), Expect = 8e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||| || ||||| || ||||| ||||| ||||| ||| |||| ||| ||| | Sbjct 862 ATGCAAATCTTCGTCAAGACCCTCACCGGAAAGACCATCACCCTCGATGTTGAG-CCATC 920 Query 115346 -GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||||| ||| | | || || || || || || ||||| |||| ||||| Sbjct 921 AGACACCATTGAAAACGTGAAGGCCAAGATCTAGGACAAGGAAGGTATCCCACCCGATCA 980 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||||||||||| | || || || ||| | ||||| | || |||| || |||| || || Sbjct 981 ACAAAGACTTATCTTCGCTGGTAAGCAACTTGAAGACGGCAGAACCTTGTCCGACTACAA 1040 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 ||| ||||| ||||| ||| | || |||| | ||| | |||| || Sbjct 1041 CATCCAAAAGGAGTCAACTCTCCACTTGGTCCTCAGACTTAGAGGTGG 1088 >seq2220 Length=3178 Score = 89.7 bits (98), Expect = 4e-13 Identities = 155/224 (69%), Gaps = 1/224 (0%) Strand=Plus/Minus Query 115291 AATT-TTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGCGACA 115349 |||| ||||||||||| | || || ||||| || || || | || | || || | Sbjct 900 AATTATTTGTCAAAACCTTAACAGGCAAAACTATCACAATCTATACTAACTCAGATGAGA 841 Query 115350 CTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAGCAAA 115409 | ||| | || | |||| |||||| |||||||| ||| | || ||| || |||| Sbjct 840 CCATTGAAGAATTTAAACTTAAAATTTAAGATAAAGAGGGCATTCCACCTGACCAACAAA 781 Query 115410 GACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAACATTC 115469 |||| |||| ||| || | |||||||||||| | ||| ||| || || ||||||| Sbjct 780 GACTCATTTTTGCAGGTATGTAATTAGAAGATGGAAGAACTCTGGGAGACTACAACATTC 721 Query 115470 AAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGA 115513 ||| ||||| || | ||| |||| | ||| | |||| ||| Sbjct 720 AAACTGAGTCCACACTGCATTTGGTTCTTAGACTCAGAGGTGGA 677 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425227580422960