Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F001297925.1_202015-09-23] 22,458 sequences; 57,457,034 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq18203 89.7 4e-13 seq14202 84.2 2e-11 >seq18203 Length=1365 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || |||| || || || |||| || || || ||||||||||| ||||||||||||| | Sbjct 1088 CCACCTCTAAGTCTGAGGACCAAGTGGAGAGTTGACTCCTTTTGGATGTTGTAGTCGGAC 1029 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | |||| || |||| || | ||| || || || | ||||| | ||||| || || Sbjct 1028 AAGGTTCTGCCGTCTTCAAGTTGCTTACCAGCGAAGATAAGTCTTTGTTGATCGGGTGGG 969 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | || || ||||| || | |||||| | | | ||||| ||||| Sbjct 968 ATACCTTCCTTGTCCTAGATCTTGGCCTTCACGTTTTCAATGGTGTCTGATGGCTCAACA 909 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | ||||||||| |||||||| || || ||||| || || ||||| Sbjct 908 TCGAGGGTGATGGTCTTTCCGGTGAGGGTCTTGACGAAGATTTGCAT 862 >seq14202 Length=1113 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||||| || |||| |||| || || || |||||||| || ||||||||||||| Sbjct 424 CCTCCTCTGAGTCTCAAGACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAGTCGGAG 365 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | |||| || |||| ||||| || || || || |||| || | |||||| || || Sbjct 364 AGGGTTCTGCCGTCTTCCAACTGCTTTCCAGCGAAAATGAGTCTCTGTTGATCGGGTGGG 305 Query 16829 ACGCCCTCTTTGTC 16842 | ||||||||||| Sbjct 304 ATTCCCTCTTTGTC 291 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 404977124629420