Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F001297925.1_202015-09-23] 22,458 sequences; 57,457,034 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq2605 131 1e-25 seq14202 107 1e-18 seq533 107 1e-18 seq18203 98.7 7e-16 >seq2605 Length=7581 Score = 131 bits (144), Expect = 1e-25 Identities = 86/95 (91%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||| ||||||||||||||||||||| || || ||||| Sbjct 6384 AAGCCCGTTCCCTTGGCTGTGGGTTCGCTAGATAGTAGATAGGGACAGTGGGAACCTCGT 6325 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 6324 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 6290 Score = 98.7 bits (108), Expect = 7e-16 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||||||||||| |||||| |||| ||||||||||||||||||| || Sbjct 4395 CTCTCTTTTCAAAGTTCTTTTCATCTTTCCTTCACAGTACTTGTTCGCTATCGGTTTCCT 4336 Query 20007 GGTAATATTTAGCCTTA 20023 ||||||||||||||| Sbjct 4335 ATTAATATTTAGCCTTA 4319 >seq14202 Length=1113 Score = 107 bits (118), Expect = 1e-18 Identities = 165/234 (71%), Gaps = 1/234 (0%) Strand=Plus/Minus Query 38085 TCATT-ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTA 38143 ||||| ||||||||| | | | ||||| || ||||| ||||||||| || ||||| Sbjct 887 TCATTGACCACCTCTAAGTCTGAGGACCAAGTGGAGAGTAGACTCCTTTTGGATGTTGTA 828 Query 38144 ATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATC 38203 || |||| | |||| || | |||||| ||||| || || || | ||||||||| Sbjct 827 GTCGCTCAAAGTTCTGCCGTCTTCAAGTTGTTTACCGGCGAAGATGAGTCTTTGTTGATC 768 Query 38204 GGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACT 38263 || || | ||||| |||||| || || || ||||||| || || || Sbjct 767 GGGTGGAATACCTTCCTTGTCCTGGATCTTGGCTTTGACATTCTCGATGGTGTCGGATGG 708 Query 38264 TTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||| || || || || ||||| ||||| |||||||| |||||||| |||| ||| Sbjct 707 TTCGACGTCCAAAGTGATAGTCTTACCGGTCAAGGTCTTCACGAAGATCTACAT 654 >seq533 Length=4588 Score = 107 bits (118), Expect = 1e-18 Identities = 163/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 ||||||||| | | ||| ||||| || ||||| || ||||| || ||||||||||| Sbjct 4216 ACCACCTCTAAGTCTCAAGACCAAGTGGAGAGTTGATTCTTTTTGGATGTTGTAATCAGA 4275 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 ||| | |||| || || | ||||| ||||| || || | |||||||| | ||| Sbjct 4276 CAAGGTTCTGCCGTCTTCCAACTACTTTCCAGCAAAGATGAGTCTCTGTTGATCAGGGGG 4335 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269 | ||||||||||| ||| || ||| || || | || ||||| | || || Sbjct 4336 AATACCTTCTTTGTCTTGAATCTTGGCCTTAACGTTTTCGATGGTATCAGAAGGCTCTAC 4395 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTT 38321 || | |||||||| ||||| ||||| || || ||||| |||| ||| ||| Sbjct 4396 ATCAAGAGTAATAGTCTTACCGGTCAAAGTCTTGACGAAGATCTACATTTTT 4447 >seq18203 Length=1365 Score = 98.7 bits (108), Expect = 7e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||||||||| | | |||||||||||||| || || || || ||||| || | Sbjct 862 TACCACCTCTCAATCTGAGGACCAAATGAAGAGTAGATTCTTTCTGGATGTTGTAGTCTG 803 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | | | | || || | ||| |||||||| || || || | ||||||||||| | Sbjct 802 AAAGAGTTCTGCCATCTTCAAGTTGCTTTCCGGCGAAGATGAGTCTTTGTTGATCGGGTG 743 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| ||||| ||||| || ||| ||| ||||||| | |||||| | || | Sbjct 742 GGATACCTTCCTTGTCTTGGATCTTTGCCTTGACATTCTCAATGGTATCTGAAGGCTCGA 683 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || || || || || || || || | ||| || ||||| || ||||| Sbjct 682 CGTCCAAGGTGATGGTCTTTCCGGTAAGGGTCTTGACGAAGATTTGCAT 634 Score = 84.2 bits (92), Expect = 1e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||||||||| | | ||||| ||||| || ||||||||| || ||||| ||| Sbjct 634 TACCACCTCTCAATCTGAGGACCAAGTGAAGGGTTGACTCCTTTTGGATGTTGTAGTCAC 575 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | | | || || | ||| ||||| ||||| || || | ||||||||||| || Sbjct 574 TAAGGGTTCTTCCATCTTCAAGTTGCTTTCCAGCAAAAATGAGTCTTTGTTGATCGGGGG 515 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | ||||| || || || || ||| || || | | ||| ||| |||| Sbjct 514 GAATACCTTCCTTATCTTGGATCTTGGCCTTGACGTTTTCAATAGTGTCTGATGGCTCAA 455 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || || || || || || || || | ||| |||||||| || ||||| Sbjct 454 CGTCCAAAGTGATGGTCTTTCCAGTGAGGGTCTTCACGAAGATTTGCAT 406 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334855522648598