Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F001297925.1_202015-09-23] 22,458 sequences; 57,457,034 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq14466 255 7e-63 seq1053 215 7e-51 seq22165 138 1e-27 >seq14466 Length=3412 Score = 255 bits (282), Expect = 7e-63 Identities = 587/876 (67%), Gaps = 16/876 (2%) Strand=Plus/Minus Query 62798 ATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTT 62857 || |||||| ||| | ||| || ||||||||||| | || | ||| || ||||| Sbjct 1941 ATAATCTCACAGCACAAATTGGAACTTTTGATGGTTCCGAGGTTCTTTTGGTTGCTCTTG 1882 Query 62858 TTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATA 62917 |||| ||||||||| | ||| ||||||| |||||||| || || ||||| ||| Sbjct 1881 CTGTTGGCGTGATCCTTATACAACATGTATGGAGTTCCAGTTTCGATTTGTGATTCAATA 1822 Query 62918 ATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCTTTTCTCTTTCGTAT 62977 || |||| ||| | | |||| || ||| | ||| || | || | || | || Sbjct 1821 ATGGCTTCCCAAAGTTTTTGAGCTTTCATTGTC--TTTCTACCAATTCCTTATTGCTCAT 1764 Query 62978 AGT--GTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCAT 63035 | | || |||| | |||||| || | || ||| | | || || ||| | Sbjct 1763 ACTTAGTGTACAGTGCTTCGAATTCTTAACCATGAACGTCGAAGAGGCCCTTGGCTTCGT 1704 Query 63036 CCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAA 63095 || || | | | ||| ||||||||| | | |||| ||||| || | || |||| Sbjct 1703 TGGGGCAGAAAAGTGTCCAGTCTCCGTCAGCTTGGACTCTCTTCATGAATAAGTCTGGAA 1644 Query 63096 TCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAA 63155 |||| ||||| | || | ||||| | ||| |||||||| || || ||||||| | | Sbjct 1643 TCCAGAGAGCGAAGAACAAGTCTCTTGCTCTTTGTTCCTCTTTACCGTGATTCTTTCTTA 1584 Query 63156 GATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAG 63215 | | ||||| | | | ||| | ||||| |||||||||||||| || | || Sbjct 1583 GTTGAAGGAAATCGAAGACATCTGCGTGCCATGGTTCCAAGTATATAGCGAATGAACCCT 1524 Query 63216 GCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTG 63275 | ||| ||||| || || | |||||||| || | ||| ||||||| | ||||| Sbjct 1523 TTCTCTTGCCACCTCCTTGGTCGACATATCTAGCAGTCTCATTGAAAACTCTGAGCATTG 1464 Query 63276 GAATAATACCATTGGATGT-ACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATA 63334 | | | ||||| ||| ||||||||| || ||| || || ||| | || | || Sbjct 1463 GCACGAGGCCATTAC-TGTGACCATTGGTGCCCTTGATGTAACTGCCAGTAGCTCTGATG 1405 Query 63335 TTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAAC 63394 || || | ||||| | || || || ||| || || | |||| || | || | Sbjct 1404 TTGTGAACAGCCAGACCCACACCACCAGCTGATTTTGAAATCAGTGCG-ATGTTCTTGAG 1346 Query 63395 G-TATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACAT 63453 | |||||||||| || | || || ||| |||| |||| || || || || ||||| Sbjct 1345 GGTATCATAGATACCGTTGATTGAGTCGTCCTTCATCATAAGGAGGAAGCAACTGGACAT 1286 Query 63454 TTGGTGACGACT----AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATT 63509 || | | || |||||| ||||| || || ||||||| ||| |||||||||||| Sbjct 1285 TT----ATGGCTTGGGAGTTCCAGCATTGAACAAAGTAGGAGTAGCATGAGTAAACCATC 1230 Query 63510 TTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTA 63569 | ||| | || ||||| || ||||| ||||| || |||||| | || || |||| Sbjct 1229 TGTCACTCATGAGGTTGTAAGTTTCAATGGCTGAATCGATATCCTTCTTGTGGATACCTA 1170 Query 63570 CTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACA 63629 | | || | ||| ||||||||||| ||||| ||||||||||| || | || || | Sbjct 1169 CAGACACTCTCATCAACATGTGCTGTGGTCTCTCAACGATCTTAGAATTGACCTTTAATA 1110 Query 63630 AGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGT 63665 |||||||| | ||||| || ||||| || ||||||| Sbjct 1109 AGTAGGATCTCTCCAAGGTCTTAAATCCGAAATAGT 1074 >seq1053 Length=3228 Score = 215 bits (238), Expect = 7e-51 Identities = 736/1123 (66%), Gaps = 42/1123 (4%) Strand=Plus/Minus Query 62567 GCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTC- 62625 || ||||| ||||||| |||||||| || || ||||| ||||| ||| || ||||| Sbjct 1936 GCATCTGCAAATCCTTAGACACCAATTCCAATTGGTCTGTGTCTAAGATTTGA-ATTTCT 1878 Query 62626 AGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTAC 62685 |||||| |||| |||||| ||||| |||||||||||||||| ||||| | |||| Sbjct 1877 AGCTTCAGGAACAGGATAGTAATTGTTATCTATAATTTTATTTAGATTCTTAGTAATTCT 1818 Query 62686 TTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCC------CATCTATTACAAACAT 62739 ||| ||| | | | || | ||||| || | | || || || | Sbjct 1817 CTTGGTCACGTAATGTAACTTCTCATAATCATATTCTTAGGTTTCCTTTAACACGAATCT 1758 Query 62740 GTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTAT 62799 || || |||| ||| || || ||||| || || || |||| | | | | ||| | Sbjct 1757 ATTTAAAGCAATAGAAGCTAGGTTACAGACAGCCACTTCATCGGGACTGGTAAATTCGAC 1698 Query 62800 TATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTT 62859 |||||||||||||| ||| || ||| || || || | ||||| | ||| ||| | Sbjct 1697 GATCTCAGTGCAAAGGTTAGAACTCTTAATTGTGCCAAGATTTTACTAGTTAGATTTTCT 1638 Query 62860 GTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAAT 62919 || || ||||| || || || || | ||||||||||| || | ||||| ||||| || Sbjct 1637 ATTGCAAGCATCTTTGTAGAGCATATAAGGAGTACCAGTCTCGTTTTGAGACTCTATGAT 1578 Query 62920 CGCTTTCCAGACGACTCGAGCCTTTA----TTATAGATTTGTATCTCTTTTCTCTTTCGT 62975 ||||| || |||||| | || || | || | | |||| | | | Sbjct 1577 TTAACCCCAGAGCCATCTAGCCTTAACAGTTTTGCGACCTCTACCAGTGGTCTCATAC-T 1519 Query 62976 ATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCAT 63035 | |||| | || || ||||| || ||||| | | ||||| || ||||||| Sbjct 1518 CGA-TGTAAAGTTTC--TCAAACTCCTCACCCCATGTAGTAGTAAGTCCTGGGCATTCAT 1462 Query 63036 CCGGACACATCAACGACCACTCTCCGTCATCCTTCA-CTCGTTTCATAAAGAGATCAGGA 63094 |||||||||| | ||| ||| | | | ||||| ||| | |||| || ||||| ||| Sbjct 1461 TTGGACACATCAGAGTCCAATCTTCATT-TGCTTCAACTCTTCTCATGAAAAGATCTGGA 1403 Query 63095 ATCCAAAGAGC-TATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTT 63153 |||||||||| || ||| || ||||| | ||||| || || || || ||||||| | Sbjct 1402 GTCCAAAGAGCGTAGAAA-AGGTCTCTAGCTCTATTCTCTTCCTTACCGTGATTCTTTCT 1344 Query 63154 AAGATCGAGGAACGCCATA-ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTC 63212 ||| | ||||| | | || ||||||| ||||| ||||| | || | || | | ||| Sbjct 1343 AAGTTAAAGGAA-GTCGTAGATATCAGCGTGCCATGGTTCAACATAGACAGCGAAAGCTC 1285 Query 63213 CAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACA 63272 | | ||| || || | ||| | |||||| ||||||| ||| | || |||||| Sbjct 1284 CCTTTCTTTTTCCACCACCTTAATCGACGTATCTTGCGGTGTCATTGAAGACCTTCAACA 1225 Query 63273 TTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAA 63332 ||||||| | ||||| || || || || ||| ||| ||| || || | || Sbjct 1224 TTGGAATCAATCCATTTGAATATCCGTTTGTACCTCTGATGTAGGAGTCAGCAGCTCTAA 1165 Query 63333 TATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTA 63392 || | ||| | || || || || || || ||||| | || | ||||| Sbjct 1164 CATCGGACACTGACACTCCGATACCACCAGCAGCCTTTGAGATAATAGCAATTTATTTTA 1105 Query 63393 ACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTA-AG-TAGAAAACAGCTAGA 63450 | || ||| |||| || || || || || | ||| || ||| || ||| ||| Sbjct 1104 AAGTTTCAAAGATACCATCAATGGAGTCTTC-----TTTTACAGTTAGCAAGAAGCAAGA 1050 Query 63451 ---CA--TTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAAC 63505 || | |||| | ||||| | ||||| | ||||||| || ||||||||| Sbjct 1049 ACTCATCTATGGTTTTG--GTGTTCCAGAGTTAAACAGAGTAGGAGTGGCATGAGTAAAC 992 Query 63506 CATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATT 63565 || || | | | || ||| ||||| | ||||| || | || || |||||| Sbjct 991 CACAGTTGACTCATCAAATCGTAAGTCTCGAACGCTGACTCAAGGTCTTCTTTATGAATA 932 Query 63566 CC--TACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTT 63623 || |||| || | ||| | |||||| || ||||| |||| ||| | |||| || | Sbjct 931 CCAATACT--TACTCTCATAAGCATGTGTTGTGGTCTCTCAAGGATTTGGTTG-CCATCT 875 Query 63624 TCAACAA-GTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGT 63665 | || || ||| | | ||||||| ||| | ||||||||||||| Sbjct 874 TTAAGAAGGTAAGCTCTTTCCAATGTTCTGAAACCAAAATAGT 832 >seq22165 Length=1746 Score = 138 bits (152), Expect = 1e-27 Identities = 381/576 (66%), Gaps = 6/576 (1%) Strand=Plus/Plus Query 32681 ACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTT 32740 ||| |||||||| ||| | || || || || ||||| || ||||| ||||||||||| Sbjct 610 ACCTTCGTCTCTTGAAATGAGCTCATTTGAGAAGGTGAGACCTGGCATGAGGCCACGCTT 669 Query 32741 TTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAA 32799 |||||||| || || || ||| || ||||| || ||||| || || || | || || | Sbjct 670 CTTAAGCCAGAAGATTGA-GCAGAAGGATCCTGAGAAGAAGATGCCCTCGATGGCAGCGA 728 Query 32800 AGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGTATCCACTTTTGAGCCCAATCGG 32859 | ||||| |||||||| | | | ||||| ||| |||||||| ||||| || | Sbjct 729 AAGCAATTAGTCTCTCAGCGAAGCTAGCGCTCTCACCAATCCACTTAATGGCCCATTCAG 788 Query 32860 CCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTAC 32919 ||||||| ||||| || || | || || || ||||| | | || || | Sbjct 789 CCTTCTTAGTTACAACTGGGATGTTAGTGATGGCTTTGAAGAGGAACTCCTTCTCGTGTG 848 Query 32920 TATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGG 32979 || | | || || || | | || | || || |||||||| || || Sbjct 849 GGTCACTGATGAGGGTGTCGATGAGTACTGAGTAAGTCTCTGAGTGAATGTTCTCCATCA 908 Query 32980 CCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTT 33039 |||||| || || ||||| || | || || | || || | ||| ||||| |||| | Sbjct 909 TCATTTGGAAGCCATAGAAACAGCGTGCTTCTGGAACTTGGATTTCAGTACAGAATCTCT 968 Query 33040 CTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTA 33099 || | || || || || |||||||| ||| || || || || | || || || | Sbjct 969 GGGCGAGGTTCTCGTTGACGATTCCGTCTGAGGCAGCGAAGAAAGCAAGGACGTGCTTGA 1028 Query 33100 TAAAATATTTTTCGTCTGGTGTT-AGTTTATTCCAATCATTGATATCTTTAGATATATCC 33158 |||| | | | |||| || || ||| | | |||||| || | ||| | | | || Sbjct 1029 TAAAGTGTCTCTCGT-TGTCATTGAGTCTCTCCCAATCTTTAACATCAGTGGCGAGGTCG 1087 Query 33159 ACTTCTTCCACTGTCCAAAATGATGCC-TCTGCCTTTTTATACATATTCCAGATGTCATG 33217 | ||| || ||||| || | ||| |||| | || ||||| ||||||||||| | Sbjct 1088 ATTTCCTCAGAGGTCCAGAAAGCAGCCATCTG-GTCCTTGTACATCTTCCAGATGTCGTT 1146 Query 33218 ATATTGAATTGGAAAAATAACAAATCTATTTGGATT 33253 || | ||||||| ||||||||||| ||||| || Sbjct 1147 GTACTTGATTGGAAGGATAACAAATCTGTTTGGGTT 1182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633454123656800