Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F001297925.1_202015-09-23] 22,458 sequences; 57,457,034 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq14202 113 4e-20 seq533 107 2e-18 seq2220 102 7e-17 >seq14202 Length=1113 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||| | ||||| || ||||||| | || || ||| | || Sbjct 426 ATGCAAATCTTCGTTAAGACCCTTACCGGAAAGACCATCACCCTTGACGTCGAGCCATCA 485 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || || | ||| ||| ||| || |||||||| || ||||| || ||| Sbjct 486 GACACCATTGAAAACGTTAAGGCAAAGATCCAAGATAAAGAAGGTATCCCACCCGATCAA 545 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || | |||| || |||||||| ||| | ||||||| | || | || |||||| Sbjct 546 CAAAGACTTATCTTCGCCGGCAAGCAACTTGAAGATGGAAGAACCCTTTCAGACTACAAT 605 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 |||||||||||||| || || || || || || || | |||||||| Sbjct 606 ATTCAAAAAGAATCTACCCTTCACTTGGTTCTTAGATTGAGAGGAGG 652 Score = 105 bits (116), Expect = 6e-18 Identities = 163/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||| | || || || ||||| ||||||||||| | ||||| | || || || | || Sbjct 654 ATGTAGATCTTCGTGAAGACCTTGACCGGTAAGACTATCACTTTGGACGTCGAACCATCC 713 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| |||||| | || |||| || ||| ||||| ||||| |||||||| || Sbjct 714 GACACCATCGAG--AATGTCAAAGC-CAAGATCCAGGACAAGGAAGGTATTCCACCCGAT 770 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 ||||| | | || || ||||| |||||| | ||||| | | ||| || |||| ||| Sbjct 771 CAACAAAGACTCATCTTCGCCGGTAAACAACTTGAAGACGGCAGAACTTTGAGCGACTAC 830 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || ||||| || || || || || || || || || || ||||| || Sbjct 831 AACATCCAAAAGGAGTCTACTCTCCACTTGGTCCTCAGACTTAGAGGTGG 880 >seq533 Length=4588 Score = 107 bits (118), Expect = 2e-18 Identities = 165/233 (71%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 24994 GAACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGT 25053 ||| |||| | || || || ||||||||||||||||| | || || | || || ||| Sbjct 4448 GAAAAATGTAGATCTTCGTCAAGACTTTGACCGGTAAGACTATTACTCTTGATGTAGAGC 4389 Query 25054 CGTCTGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCT 25112 | ||||| || ||||| | ||| | || | ||| ||||||||||| ||||| ||| Sbjct 4388 CTTCTGATACCATCGAAAACGTTAAGGCCAAGATTCAA-GACAAAGAAGGTATTCCCCCT 4330 Query 25113 GACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGAT 25172 || |||||| | | || ||||| || || | || ||||| | | || || ||| Sbjct 4329 GATCAACAGAGACTCATCTTTGCTGGAAAGTAGTTGGAAGACGGCAGAACCTTGTCTGAT 4270 Query 25173 TACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||||| || ||||||||||| || || || || || | || || ||||| || Sbjct 4269 TACAACATCCAAAAAGAATCAACTCTCCACTTGGTCTTGAGACTTAGAGGTGG 4217 >seq2220 Length=3178 Score = 102 bits (112), Expect = 7e-17 Identities = 157/224 (70%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 25003 AAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACA 25062 || ||||||| || || || || || ||| | |||||| || | | || ||| | Sbjct 900 AATTATTTGTCAAAACCTTAACAGGCAAAACTATCACAATCTATACTAACTCAGATGAGA 841 Query 25063 CTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGC 25122 | || || | | || | ||||| || ||||| || ||||||||||||||||| Sbjct 840 CCATTGAAGAATTTAAACTTAAAATTTAAGATAAAGAGGGCATTCCACCTGACCAACAAA 781 Query 25123 GGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTC 25182 | | |||||||| || | |||||||||||| | ||| |||| || ||||| |||| Sbjct 780 GACTCATTTTTGCAGGTATGTAATTAGAAGATGGAAGAACTCTGGGAGACTACAACATTC 721 Query 25183 AAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGA 25226 ||| || ||||| || ||||| || || || || ||||| ||| Sbjct 720 AAACTGAGTCCACACTGCATTTGGTTCTTAGACTCAGAGGTGGA 677 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433209395147270