Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F001297925.1_202015-09-23] 22,458 sequences; 57,457,034 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq18203 206 5e-48 seq14202 183 6e-41 seq533 163 5e-35 seq2220 107 4e-18 >seq18203 Length=1365 Score = 206 bits (228), Expect = 5e-48 Identities = 171/209 (82%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 ||||| || || || || ||||| |||||||| || || || || || || |||||||| Sbjct 842 ACCAAATGAAGAGTAGATTCTTTCTGGATGTTGTAGTCTGAAAGAGTTCTGCCATCTTCA 783 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | ||||| |||||||| |||||||||||||| |||||||| || |||||||||||||| Sbjct 782 AGTTGCTTTCCGGCGAAGATGAGTCTTTGTTGATCGGGTGGGATACCTTCCTTGTCTTGG 723 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 |||||||||||||| ||| ||||| |||| | || || |||||||||||||| ||| Sbjct 722 ATCTTTGCCTTGACATTCTCAATGGTATCTGAAGGCTCGACGTCCAAGGTGATGGTCTTT 663 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || |||||||||||||| || ||||| Sbjct 662 CCGGTAAGGGTCTTGACGAAGATTTGCAT 634 Score = 188 bits (208), Expect = 1e-42 Identities = 167/209 (80%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||||||| || || ||||| ||||||||||| || || || || || |||||||| Sbjct 614 ACCAAGTGAAGGGTTGACTCCTTTTGGATGTTGTAGTCACTAAGGGTTCTTCCATCTTCA 555 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | ||||| || || || |||||||||||||| ||||| ||||| |||||||| ||||| Sbjct 554 AGTTGCTTTCCAGCAAAAATGAGTCTTTGTTGATCGGGGGGAATACCTTCCTTATCTTGG 495 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 ||||| ||||||||| || || ||||||| || || || ||||| |||||||| ||| Sbjct 494 ATCTTGGCCTTGACGTTTTCAATAGTGTCTGATGGCTCAACGTCCAAAGTGATGGTCTTT 435 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || ||||||||||| ||||| || ||||| Sbjct 434 CCAGTGAGGGTCTTCACGAAGATTTGCAT 406 Score = 188 bits (208), Expect = 1e-42 Identities = 167/209 (80%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||||||| || || ||||| ||||||||||| || ||||| | || || || ||||| Sbjct 1070 ACCAAGTGGAGAGTTGACTCCTTTTGGATGTTGTAGTCGGACAAGGTTCTGCCGTCTTCA 1011 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | ||||| || ||||| || ||||||||||| |||||||| || ||||||||||| | Sbjct 1010 AGTTGCTTACCAGCGAAGATAAGTCTTTGTTGATCGGGTGGGATACCTTCCTTGTCCTAG 951 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 ||||| ||||| ||| || |||||||||| || || || || | ||||||||| ||| Sbjct 950 ATCTTGGCCTTCACGTTTTCAATGGTGTCTGATGGCTCAACATCGAGGGTGATGGTCTTT 891 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || ||||||||||||||||| || ||||| Sbjct 890 CCGGTGAGGGTCTTGACGAAGATTTGCAT 862 Score = 183 bits (202), Expect = 6e-41 Identities = 166/209 (79%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||||||| || || || || || |||||||| || ||||| | || || || ||||| Sbjct 386 ACCAAGTGAAGGGTTGATTCCTTCTGGATGTTGTAGTCGGACAAGGTTCTTCCGTCTTCG 327 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | ||||| || ||||| |||||||||||||| |||||||| || |||||||||||||| Sbjct 326 AGTTGCTTGCCAGCGAAGATGAGTCTTTGTTGATCGGGTGGGATTCCTTCCTTGTCTTGG 267 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 ||||| |||||||| ||||||||||| | | || || ||||| |||||||| || Sbjct 266 ATCTTGGCCTTGACATTTTCGATGGTGTCAGAGGGCTCAACGTCCAAAGTGATGGTCTTG 207 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || ||||||||||| ||||| || ||||| Sbjct 206 CCTGTGAGGGTCTTAACGAAGATTTGCAT 178 >seq14202 Length=1113 Score = 183 bits (202), Expect = 6e-41 Identities = 166/209 (79%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||||||| || || || |||||||| || || || || || || || || |||||||| Sbjct 634 ACCAAGTGAAGGGTAGATTCTTTTTGAATATTGTAGTCTGAAAGGGTTCTTCCATCTTCA 575 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | ||||| |||||||| || ||||||||||| |||||||| || ||||| || ||||| Sbjct 574 AGTTGCTTGCCGGCGAAGATAAGTCTTTGTTGATCGGGTGGGATACCTTCTTTATCTTGG 515 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 ||||||||||| ||| || |||||||||| || || || || | ||||||||| ||| Sbjct 514 ATCTTTGCCTTAACGTTTTCAATGGTGTCTGATGGCTCGACGTCAAGGGTGATGGTCTTT 455 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || |||||||| ||||| || ||||| Sbjct 454 CCGGTAAGGGTCTTAACGAAGATTTGCAT 426 Score = 179 bits (198), Expect = 7e-40 Identities = 165/209 (79%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||||||| || || ||||| ||||||||||| || ||| | || || || ||||| Sbjct 862 ACCAAGTGGAGAGTAGACTCCTTTTGGATGTTGTAGTCGCTCAAAGTTCTGCCGTCTTCA 803 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | || || |||||||| |||||||||||||| ||||||||||| ||||||||||| || Sbjct 802 AGTTGTTTACCGGCGAAGATGAGTCTTTGTTGATCGGGTGGAATACCTTCCTTGTCCTGG 743 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 ||||| || ||||| |||||||||||| | || ||| || ||||| ||||| || || Sbjct 742 ATCTTGGCTTTGACATTCTCGATGGTGTCGGATGGTTCGACGTCCAAAGTGATAGTCTTA 683 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || | |||||| ||||| |||| ||| Sbjct 682 CCGGTCAAGGTCTTCACGAAGATCTACAT 654 >seq533 Length=4588 Score = 163 bits (180), Expect = 5e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || | ||| | ||| |||||||| || || || |||||||||||||| ||||| || Sbjct 4217 CCACCTCTAAGTCTCAAGACCAAGTGGAGAGTTGATTCTTTTTGGATGTTGTAATCAGAC 4276 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || || || ||||| |||| ||| || || || |||||||| ||||| || || ||| Sbjct 4277 AAGGTTCTGCCGTCTTCCAACTACTTTCCAGCAAAGATGAGTCTCTGTTGATCAGGGGGA 4336 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || ||||| |||||||||||||| ||||| ||| |||||||| || | | ||||| Sbjct 4337 ATACCTTCTTTGTCTTGAATCTTGGCCTTAACGTTTTCGATGGTATCAGAAGGCTCTACA 4396 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 || | || || || || || || | ||||||||||| |||| |||| Sbjct 4397 TCAAGAGTAATAGTCTTACCGGTCAAAGTCTTGACGAAGATCTACATT 4444 >seq2220 Length=3178 Score = 107 bits (118), Expect = 4e-18 Identities = 147/203 (72%), Gaps = 2/203 (1%) Strand=Plus/Plus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 ||||| || || |||||||| |||| ||||| || || || || || ||||||||| Sbjct 696 ACCAAATGCAGTGTGGACTCAGTTTGAATGTTGTAGTCTCCCAGAGTTCTTCCATCTTCT 755 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 || | | | || || || ||||||||||||||||| ||||||||||| || || |||| | Sbjct 756 AATTACATACCTGCAAAAATGAGTCTTTGTTGGTCAGGTGGAATGCCCTCTTTATCTTAA 815 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT-TCCAAGGTGATGGTTTT 68431 || || || | | || ||||| || |||| | || | | | ||||| ||||| Sbjct 816 ATTTTAAGTTTAAATTCTTCAATGGTCTCATCTGAGT-TAGTATAGATTGTGATAGTTTT 874 Query 68432 TCCCGTGAGGGTCTTGACGAATA 68454 || || | ||| ||||| |||| Sbjct 875 GCCTGTTAAGGTTTTGACAAATA 897 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921363677551760