Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F001297925.1_202015-09-23] 22,458 sequences; 57,457,034 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq22165 147 4e-30 >seq22165 Length=1746 Score = 147 bits (162), Expect = 4e-30 Identities = 390/586 (67%), Gaps = 25/586 (4%) Strand=Plus/Minus Query 42285 ATCGAGCACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTT--CTCCAA-CTGGACC 42341 ||| || || | ||||||||| ||||||||| | ||| | || | ||||||| Sbjct 1155 ATCAAGTACAACGACATCTGGAAGATGTACAAGGAC---CAGATGGCTGCTTTCTGGACC 1099 Query 42342 GCCGAGGAGATTGACCTGGCCAAGGACACGGCCGGCTGGGAGTCACTGTCTGAGAACGAA 42401 | ||||| || ||||| |||| || | |||||| ||| ||| ||||| Sbjct 1098 TCTGAGGAAATCGACCTCGCCACTGATGTTAAAGATTGGGAGAGACTCAATGACAACGAG 1039 Query 42402 AAGTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAG 42461 | || |||| || | || || |||||||| ||||| ||||| || ||||| ||| Sbjct 1038 AGACACTTTATCAAGCACGTCCTTGCTTTCTTCGCTGCCTCAGACGGAATCGTCAACGAG 979 Query 42462 AACCTGGCCACCAGGTTCATGAAAGAGGTGCA-GTACTTTGAGGCGCGCTGCTTCTACGG 42520 ||||| ||| || ||| | || | || || | || || ||||| ||||| || Sbjct 978 AACCTCGCCCAGAGATTCTGTACTGAAATCCAAGTTCCA-GAAGCACGCTGTTTCTATGG 920 Query 42521 CTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTA 42580 |||||| || || |||||| | ||||| ||| ||| | ||| || |||| Sbjct 919 CTTCCAAATGATGATGGAGAACATTCACTCAGAGACTTACTCAGTACTCATCGACACCCT 860 Query 42581 CATCCTGGATCCCGTCGAGCGTAACGGG---CTGTTCAAGGCCATGGAGACGATGCCCTG 42637 |||| || || |||| || | | || ||||| ||||| | || || Sbjct 859 CATCAGTGACCCACACGAG---AAGGAGTTCCTCTTCAAAGCCATCACTAACATCCCAGT 803 Query 42638 CATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCG---AGAGTCCCGACGCAACGTT 42694 | | |||||||| || ||||| | || ||||| | |||| ||| | || Sbjct 802 TGTAACTAAGAAGGCTGAATGGGCCATTAAGTGGATTGGTGAGAG------CGCTAGCTT 749 Query 42695 CGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGC 42754 || ||||| || | || || | ||| ||||||||||||||||||| || ||||| Sbjct 748 CGCTGAGAGACTAATTGCTTTCGCTGCCATCGAGGGCATCTTCTTCTCAGGATCCTTCTG 689 Query 42755 CTCCATCTTCTGGCTCAAGCAGAA-GGTGTCGATGCCCGGACTCACCTTCTCGAACGAAC 42813 ||| ||||||||||| ||| || || || ||||| || ||||||||||| || || | Sbjct 688 CTCAATCTTCTGGCTTAAGAAGCGTGGCCTC-ATGCCAGGTCTCACCTTCTCAAATGAGC 630 Query 42814 TCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCT 42859 |||| || ||||| || |||||| |||||||| |||||||| Sbjct 629 TCATTTCAAGAGACGAAGGTATGCATACTGACTTTGCTTGCCTCCT 584 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944074100378080