Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F001297925.1_202015-09-23] 22,458 sequences; 57,457,034 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq18203 89.7 6e-13 >seq18203 Length=1365 Score = 89.7 bits (98), Expect = 6e-13 Identities = 162/237 (68%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 41972 AATTTATCGACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATT 42031 |||| ||| ||| ||||| | | | ||||| || | || ||||||||| || || Sbjct 1098 AATTGATCAACCACCTCTAAGTCTGAGGACCAAGTGGAGAGTTGACTCCTTTTGGATGTT 1039 Query 42032 GTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTG 42091 ||| || | || || | |||| || || |||||||||||||| || |||| || || Sbjct 1038 GTAGTCGGACAAGGTTCTGCCGTCTTCAAGTTGCTTACCAGCGAAGATAAGTCTTTGTTG 979 Query 42092 GTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCT 42151 |||| ||| | | ||||||||| ||| || || | | | | ||||| Sbjct 978 ATCGGGTGGGATACCTTCCTTGTCCTAGATCTTGGCCTTCACGTTTTCAATGGTGTCTGA 919 Query 42152 CGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || ||||||| |||||||| || || || || ||||| || ||||||||||| Sbjct 918 TGGCTCAACATCGAGGGTGATGGTCTTTCCGGTGAGGGTCTTGACGAAGATTTGCAT 862 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543060306586720