Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F001297925.1_202015-09-23] 22,458 sequences; 57,457,034 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq1053 123 2e-23 >seq1053 Length=3228 Score = 123 bits (136), Expect = 2e-23 Identities = 324/490 (66%), Gaps = 6/490 (1%) Strand=Plus/Plus Query 93881 GGTATAC-CATGGCCACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCT 93939 ||| ||| |||| |||| || || ||||| ||| | || || || ||| ||||| | Sbjct 991 GGTTTACTCATG-CCACTCCTACTCTGTTTAACTCTGGAACACCAAAACCATAGATGAGT 1049 Query 93940 TCGTGTTTCCTGATGACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAG 93999 || || ||| || | || || | |||||||| || || || || | | || Sbjct 1050 TCTTGCTTCTTGCTAACTGTAAAAGAAGACTCCATTGATGGTATCTTTGAAACTTTAAAA 1109 Query 94000 GACTGTGCGACCATCTCAAAATACGCGGGGGGAATCGGGAT--CAGTGTCCACGACGTAC 94057 | ||| | |||||||| || || || ||||| | |||||||| || || Sbjct 1110 TAAATTGCTATTATCTCAAAGGCTGCTGGTGGTATCGGAGTGTCAGTGTCC--GATGTTA 1167 Query 94058 GTGCCAGGGGTTCCTACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGC 94117 | || | ||||||||| | ||||| || || || || || | | || ||| Sbjct 1168 GAGCTGCTGACTCCTACATCAGAGGTACAAACGGATATTCAAATGGATTGATTCCAATGT 1227 Query 94118 TCCGGGTCTTCAACAACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTT 94177 | ||||||||| || | || | ||||| || | |||||||| | || ||||| Sbjct 1228 TGAAGGTCTTCAATGACACCGCAAGATACGTCGATTAAGGTGGTGGAAAAAGAAAGGGAG 1287 Query 94178 CTTTCGCGGTCTATCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAA 94237 ||||||| |||||| | || || |||||||| || | | | ||| | | || ||| Sbjct 1288 CTTTCGCTGTCTATGTTGAACCATGGCACGCTGATATCTACGACTTCCTTTAACTTAGAA 1347 Query 94238 AGAACCACGGCAACGATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAG 94297 |||| ||||| || || | | || || |||||||| ||||||||||| ||| |||| Sbjct 1348 AGAATCACGGTAAGGAAGAGAATAGAGCTAGAGACCTTTTCTACGCTCTTTGGACTCCAG 1407 Query 94298 ACCTTTTTATGAAACGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAAT 94357 | ||||| |||| | | || || ||| | |||| ||| | ||||| ||||||| Sbjct 1408 ATCTTTTCATGAGAAGAGTTGAAGCAAATGAAGATTGGACTCTGATGTGTCCAAATGAAT 1467 Query 94358 GTCCCGGACT 94367 | || ||||| Sbjct 1468 GCCCAGGACT 1477 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494584318829680