Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F001297925.1_202015-09-23] 22,458 sequences; 57,457,034 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq18203 113 3e-20 seq14202 109 4e-19 seq533 93.3 3e-14 >seq18203 Length=1365 Score = 113 bits (124), Expect = 3e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| |||||| | || |||||||| ||||| ||||| || |||||||| || Sbjct 860 CCACCTCTCAATCTGAGGACCAAATGAAGAGTAGATTCTTTCTGGATGTTGTAGTCTGAA 801 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| |||| | ||||| | ||| || || ||| | || | | ||||| ||| ||| Sbjct 800 AGAGTTCTGCCATCTTCAAGTTGCTTTCCGGCGAAGATGAGTCTTTGTTGATCGGGTGGG 741 Query 15070 ATTCCTTCCTTGTCACAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128 || ||||||||||| || ||||| || ||| | || || ||||| | || || Sbjct 740 ATACCTTCCTTGTCTTGGATCTTTGC-CTTGACATTCTCAATGGTATCTGAAGGCTCGAC 682 Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 ||| ||||| ||||| || || || || || || || || ||||||||| Sbjct 681 GTCCAAGGTGATGGTCTTTCCGGTAAGGGTCTTGACGAAGATTTGCATA 633 Score = 109 bits (120), Expect = 4e-19 Identities = 165/233 (71%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || |||| | ||| | ||| || |||||||| || || || || |||||||| ||| | Sbjct 404 CCTCCTCTGAGTCTGAGAACCAAGTGAAGGGTTGATTCCTTCTGGATGTTGTAGTCG--G 347 Query 15010 AGAA--TTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | || |||| ||||||| | ||| ||||||||| | || | | ||||| ||| || Sbjct 346 ACAAGGTTCTTCCGTCTTCGAGTTGCTTGCCAGCGAAGATGAGTCTTTGTTGATCGGGTG 287 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 | |||||||||||||| || ||| || ||| |||| || || || || | Sbjct 286 GGATTCCTTCCTTGTCTTGGATCTTGGCCTTGACATTTTCGATGGTGTCAGAGGGCTCAA 227 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTT 15180 |||| || || ||||| || ||||| || || || || || |||||||| ||| Sbjct 226 CGTCCAAAGTGATGGTCTTGCCTGTGAGGGTCTTAACGAAGATTTGCATGTTT 174 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| | ||| | || || || || || || || ||||| |||||||| ||| | Sbjct 1088 CCACCTCTAAGTCTGAGGACCAAGTGGAGAGTTGACTCCTTTTGGATGTTGTAGTCG--G 1031 Query 15010 AGAA--TTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | || |||| ||||||| | ||| || |||||| | || | | ||||| ||| || Sbjct 1030 ACAAGGTTCTGCCGTCTTCAAGTTGCTTACCAGCGAAGATAAGTCTTTGTTGATCGGGTG 971 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 | || ||||||||||| | || ||| || || |||| || || || || | Sbjct 970 GGATACCTTCCTTGTCCTAGATCTTGGCCTTCACGTTTTCAATGGTGTCTGATGGCTCAA 911 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 | || | ||| ||||| || || || || || || || || ||||||||| Sbjct 910 CATCGAGGGTGATGGTCTTTCCGGTGAGGGTCTTGACGAAGATTTGCATA 861 >seq14202 Length=1113 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| | ||| | || || || || ||||| || ||||| |||||||| ||||| Sbjct 880 CCACCTCTAAGTCTGAGGACCAAGTGGAGAGTAGACTCCTTTTGGATGTTGTAGTCGCTC 821 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | | |||| ||||||| | |||||| || ||| | || | | ||||| ||| |||| Sbjct 820 AAAGTTCTGCCGTCTTCAAGTTGTTTACCGGCGAAGATGAGTCTTTGTTGATCGGGTGGA 761 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||||||||| || ||| ||| ||| | || || || ||| ||| ||| Sbjct 760 ATACCTTCCTTGTCCTGGATCTTGGCTTTGACATTCTCGATGGTGTCGGATGGTTCGACG 701 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || || || || ||||| |||| || || || || || | |||| Sbjct 700 TCCAAAGTGATAGTCTTACCGGTCAAGGTCTTCACGAAGATCTACATA 653 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || |||| |||||| | ||| || ||||||||||| |||||||| || ||||| || Sbjct 652 CCTCCTCTCAATCTAAGAACCAAGTGAAGGGTAGATTCTTTTTGAATATTGTAGTCTGAA 593 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || |||| | ||||| | ||| ||||| ||| | || | | ||||| ||| ||| Sbjct 592 AGGGTTCTTCCATCTTCAAGTTGCTTGCCGGCGAAGATAAGTCTTTGTTGATCGGGTGGG 533 Query 15070 ATTCCTTCCTTGTCACAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128 || ||||| || || || ||||| || || |||| || || || || || Sbjct 532 ATACCTTCTTTATCTTGGATCTTTGC-CTTAACGTTTTCAATGGTGTCTGATGGCTCGAC 474 Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 ||| | ||| ||||| || || || || || || || || ||||||||| Sbjct 473 GTCAAGGGTGATGGTCTTTCCGGTAAGGGTCTTAACGAAGATTTGCATA 425 >seq533 Length=4588 Score = 93.3 bits (102), Expect = 3e-14 Identities = 168/244 (69%), Gaps = 4/244 (2%) Strand=Plus/Plus Query 14939 AACCATGTCTGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGT 14998 |||| || | ||||||| | ||| || || || || || || || |||||||| |||| Sbjct 4206 AACCTTGACCACCACCTCTAAGTCTCAAGACCAAGTGGAGAGTTGATTCTTTTTGGATGT 4265 Query 14999 TGTAATCGCTGAGAA--TTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTG 15056 |||||| | || || |||| ||||||| || | || ||||| | || | | ||| Sbjct 4266 TGTAAT--CAGACAAGGTTCTGCCGTCTTCCAACTACTTTCCAGCAAAGATGAGTCTCTG 4323 Query 15057 TTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATC 15116 ||| || ||||| ||||| ||||| ||| ||| || || |||| || ||||| Sbjct 4324 TTGATCAGGGGGAATACCTTCTTTGTCTTGAATCTTGGCCTTAACGTTTTCGATGGTATC 4383 Query 15117 GCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 | ||||| || | ||||| || ||||| |||| ||| || || || || | ||| Sbjct 4384 AGAAGGCTCTACATCAAGAGTAATAGTCTTACCGGTCAAAGTCTTGACGAAGATCTACAT 4443 Query 15177 ATTT 15180 ||| Sbjct 4444 TTTT 4447 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357294179352530