Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F001297925.1_202015-09-23] 22,458 sequences; 57,457,034 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq22165 109 7e-19 >seq22165 Length=1746 Score = 109 bits (120), Expect = 7e-19 Identities = 209/303 (69%), Gaps = 9/303 (3%) Strand=Plus/Plus Query 127519 AGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 127578 |||||| || || | ||| ||||| | || ||||| ||||| |||||| ||||| Sbjct 592 AGCAAAGTCAGTATGCATACCTTCGTCTCTTGAAATGAGCTCATTTGAGAAGGTGAGACC 651 Query 127579 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGAT 127638 ||||||||| || |||||||| | |||||| || | || || || || ||||||||||| Sbjct 652 TGGCATGAGGCCACGCTTCTTAAGCCAGAAGATTGAGCAGAAGGATCCTGAGAAGAAGAT 711 Query 127639 CCCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAG-GAGCGGGACTTTGTATCAA 127697 ||||| | ||||| |||| ||| | ||| || ||| |||| || | | ||| Sbjct 712 GCCCTCGATGGCAGCGAAAGCAATTAGTCTCTCAGCGAAGCTAGCG---CTCT-CACCAA 767 Query 127698 ACCACTTCATCGCCCACTGTGCCTTTTTCTCGATACA--TGGGACGGTCTGGATCGCTTC 127755 |||||| || ||||| | ||||| | | | |||| ||||| | | ||| |||| Sbjct 768 TCCACTTAATGGCCCATTCAGCCTTCT--TAGTTACAACTGGGATGTTAGTGATGGCTTT 825 Query 127756 AAAGAGTTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGT 127815 ||||| || ||| || ||| || ||||| | || |||||| ||| || || Sbjct 826 GAAGAGGAACTCCTTCTCGTGTGGGTCACTGATGAGGGTGTCGATGAGTACTGAGTAAGT 885 Query 127816 TTC 127818 || Sbjct 886 CTC 888 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613334973191280