Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F001297925.1_202015-09-23] 22,458 sequences; 57,457,034 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq18203 143 6e-29 seq14202 141 2e-28 >seq18203 Length=1365 Score = 143 bits (158), Expect = 6e-29 Identities = 163/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 || |||||| ||||| | ||||||||| ||||||||||||| ||||||||| | ||| || Sbjct 1083 TCTAAGTCTGAGGACCAAGTGGAGAGTTGACTCCTTTTGGATGTTGTAGTCGGACAAGGT 1024 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 || || ||||| || ||||| || |||||||| || | || || || || || || Sbjct 1023 TCTGCCGTCTTCAAGTTGCTTACCAGCGAAGATAAGTCTTTGTTGATCGGGTGGGATACC 964 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 ||| |||| ||||| ||||||| ||| | |||||||| || || ||||| | Sbjct 963 TTCCTTGTCCTAGATCTTGGCCTTCACGTTTTCAATGGTGTCTGATGGCTCAACATCGAG 904 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || ||||| || || || || ||||| Sbjct 903 GGTGATGGTCTTTCCGGTGAGGGTCTTGACGAAGATTTG 865 Score = 132 bits (146), Expect = 1e-25 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473 ||| ||||| | ||| || || ||||||||||||| |||||||||| | || ||||| Sbjct 621 TCTGAGGACCAAGTGAAGGGTTGACTCCTTTTGGATGTTGTAGTCACTAAGGGTTCTTCC 562 Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533 |||||| || |||||||| || || ||||| | || || || || ||| ||||| Sbjct 561 ATCTTCAAGTTGCTTTCCAGCAAAAATGAGTCTTTGTTGATCGGGGGGAATACCTTCCTT 502 Query 199534 CTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGAT 199593 || || ||||| ||| ||| ||| | ||||||| || || || ||||| ||||| Sbjct 501 ATCTTGGATCTTGGCCTTGACGTTTTCAATAGTGTCTGATGGCTCAACGTCCAAAGTGAT 442 Query 199594 CGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || ||||| || ||||| || ||||| Sbjct 441 GGTCTTTCCAGTGAGGGTCTTCACGAAGATTTG 409 Score = 122 bits (134), Expect = 2e-22 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 199412 AGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTT 199471 ||||| || || | ||| || || || ||||| |||| ||||||||| | ||| || ||| Sbjct 395 AGTCTGAGAACCAAGTGAAGGGTTGATTCCTTCTGGATGTTGTAGTCGGACAAGGTTCTT 336 Query 199472 CCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCT 199531 || ||||| || ||||| || ||||||||||| | || || || || |||||||| Sbjct 335 CCGTCTTCGAGTTGCTTGCCAGCGAAGATGAGTCTTTGTTGATCGGGTGGGATTCCTTCC 276 Query 199532 CGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTG 199591 || || ||||| ||| || ||||| |||||| | | || || ||||| ||| Sbjct 275 TTGTCTTGGATCTTGGCCTTGACATTTTCGATGGTGTCAGAGGGCTCAACGTCCAAAGTG 216 Query 199592 ATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || ||||| || ||||| || || || || ||||| Sbjct 215 ATGGTCTTGCCTGTGAGGGTCTTAACGAAGATTTG 181 Score = 109 bits (120), Expect = 1e-18 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473 ||| ||||| | || ||||| || || || |||| ||||||||| | | ||| || || Sbjct 849 TCTGAGGACCAAATGAAGAGTAGATTCTTTCTGGATGTTGTAGTCTGAAAGAGTTCTGCC 790 Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533 |||||| || |||||||||||||||||||| | || || || || || ||||| Sbjct 789 ATCTTCAAGTTGCTTTCCGGCGAAGATGAGTCTTTGTTGATCGGGTGGGATACCTTCCTT 730 Query 199534 CTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGAT 199593 || || |||||| ||| || || | ||| |||| | || || ||||| ||||| Sbjct 729 GTCTTGGATCTTTGCCTTGACATTCTCAATGGTATCTGAAGGCTCGACGTCCAAGGTGAT 670 Query 199594 CGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || || || || || || ||||| Sbjct 669 GGTCTTTCCGGTAAGGGTCTTGACGAAGATTTG 637 Score = 86.0 bits (94), Expect = 1e-11 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 200930 AAAAACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACG 200989 ||| ||| ||||||||||||||||| | |||||||| || ||| | | || |||||| Sbjct 755 AAAGACTCATCTTCGCCGGAAAGCAACTTGAAGATGGCAGAACTCTTTCAGACTACAACA 814 Query 200990 TCCAGAAAGAGTCTACTCTTCA 201011 |||||||||| ||||||||||| Sbjct 815 TCCAGAAAGAATCTACTCTTCA 836 >seq14202 Length=1113 Score = 141 bits (156), Expect = 2e-28 Identities = 161/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 || |||||| ||||| | ||||||||| ||||||||||||| ||||||||| |||||| Sbjct 875 TCTAAGTCTGAGGACCAAGTGGAGAGTAGACTCCTTTTGGATGTTGTAGTCGCTCAAAGT 816 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 || || ||||| || || || |||||||||||||| | || || || || ||| || Sbjct 815 TCTGCCGTCTTCAAGTTGTTTACCGGCGAAGATGAGTCTTTGTTGATCGGGTGGAATACC 756 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 ||| ||||| ||||| || || |||| |||||| | || ||| || ||||| Sbjct 755 TTCCTTGTCCTGGATCTTGGCTTTGACATTCTCGATGGTGTCGGATGGTTCGACGTCCAA 696 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAAT 199623 ||||| |||||||| || | || ||||| || || Sbjct 695 AGTGATAGTCTTACCGGTCAAGGTCTTCACGAAGAT 660 Score = 105 bits (116), Expect = 2e-17 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473 ||| || || | ||| || || || || ||||| | |||||||| | | || ||||| Sbjct 641 TCTAAGAACCAAGTGAAGGGTAGATTCTTTTTGAATATTGTAGTCTGAAAGGGTTCTTCC 582 Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533 |||||| || ||||| ||||||||||| || | || || || || || |||||| Sbjct 581 ATCTTCAAGTTGCTTGCCGGCGAAGATAAGTCTTTGTTGATCGGGTGGGATACCTTCTTT 522 Query 199534 CTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGAT 199593 || || |||||| ||| ||| ||| | |||||||| || || || || | ||||| Sbjct 521 ATCTTGGATCTTTGCCTTAACGTTTTCAATGGTGTCTGATGGCTCGACGTCAAGGGTGAT 462 Query 199594 CGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || || || || || || ||||| Sbjct 461 GGTCTTTCCGGTAAGGGTCTTAACGAAGATTTG 429 Score = 87.8 bits (96), Expect = 4e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 200934 ACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCA 200993 ||| || ||||| ||||||||||||||||| || || || | |||| |||||| |||| Sbjct 323 ACTCATTTTCGCTGGAAAGCAGTTGGAAGACGGCAGAACCCTCTCCGACTACAACATCCA 382 Query 200994 GAAAGAGTCTACTCTTCACCTTGTTTTGAGACT 201026 ||| ||||| || |||||| | || |||||||| Sbjct 383 GAAGGAGTCAACCCTTCACTTGGTCTTGAGACT 415 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178582373414686