Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F001297925.1_202015-09-23] 22,458 sequences; 57,457,034 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq18203 89.7 6e-13 seq14202 82.4 9e-11 >seq18203 Length=1365 Score = 89.7 bits (98), Expect = 6e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| ||||| ||||||||||| | || | |||| ||||| |||||||| ||||| Sbjct 368 TCCTTCTGGATGTTGTAGTCGGACAAGGTTCTTCCGTCTTCGAGTTGCTTGCCAGCGAAG 309 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 || | | || || |||| || | | |||||||| |||||| ||||| | Sbjct 308 ATGAGTCTTTGTTGATCGGGTGGGATTCCTTCCTTGTCTTGGATCTTGGCCTTGACATTT 249 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | ||||| | || || |||| |||||||| ||||| || || || ||||| Sbjct 248 TCGATGGTGTCAGAGGGCTCAACGTCCAAAGTGATGGTCTTGCCTGTGAGGGTCTTAACG 189 Query 46583 AAGATTTGCATTTT 46596 ||||||||||| || Sbjct 188 AAGATTTGCATGTT 175 >seq14202 Length=1113 Score = 82.4 bits (90), Expect = 9e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 |||||||| | | ||| |||| || | || |||||| ||||| ||||||||||| Sbjct 424 CCTCCTCTGAGTCTCAAGACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAGTCGGAG 365 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || || | |||| || | |||||| || ||||| || | | ||| || |||| || Sbjct 364 AGGGTTCTGCCGTCTTCCAACTGCTTTCCAGCGAAAATGAGTCTCTGTTGATCGGGTGGG 305 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | ||| ||||| |||||| ||||| | | | || || | || ||| Sbjct 304 ATTCCCTCTTTGTCTTGGATCTTAGCCTTGACATTTTCAATGGTATCTGATGGCTCAACA 245 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTT 46596 || | |||||||| ||||| || || || ||||| || |||| ||| || Sbjct 244 TCAAGAGTGATGGTCTTGCCAGTGAGAGTCTTAACGAAAATTTACATGTT 195 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565079723450160