Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F001297925.1_202015-09-23] 22,458 sequences; 57,457,034 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq22165 147 2e-30 seq14202 129 6e-25 seq18203 123 2e-23 >seq22165 Length=1746 Score = 147 bits (162), Expect = 2e-30 Identities = 335/500 (67%), Gaps = 7/500 (1%) Strand=Plus/Plus Query 132876 CAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAG 132935 ||| |||||| | | | |||||||||||| ||||| || ||||| || |||||||| Sbjct 571 CAAGTGCTTGTAGAGGAGGCAAGCAAAGTCAGTATGCATACCTTCGTCTCTTGAAATGAG 630 Query 132936 TTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGC 132995 || || ||| || | || ||||||||||| || || || ||||| || || | | Sbjct 631 CTCATTTGAGAAGGTGAGACCTGGCATGAGGCCACGCTTCTTAAGCCAGAAGATTGAGCA 690 Query 132996 GAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAA 133055 ||| || || ||||||| |||||||| ||| |||||||| | || | ||| |||| Sbjct 691 GAAGGATCCTGAGAAGAAGATGCCCTCGATGGCAGCGAAAGCAATTAGTCTCTCAGCGAA 750 Query 133056 CGTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGG 133115 | || || | | ||||| | |||||||| ||||| | | || || Sbjct 751 GCTAGC-GCTCT--CACCAATCCACTTAATGGCCCATTCAGCCTTCTTAGTTACAACTGG 807 Query 133116 CATCGTTTCGATGGCGTTCAACA--AACGGAGTTTCTCTTCCGAGGAACGCACGTAGGTG 133173 || | |||||| || || | ||| ||||| | | | || | | |||| Sbjct 808 GATGTTAGTGATGGCTTTGAAGAGGAAC--TCCTTCTCGTGTGGGTCACTGATGAGGGTG 865 Query 133174 TCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAA 133233 |||||||| || || | || ||||| | ||||||||| ||||| ||||| || Sbjct 866 TCGATGAGTACTGAGTAAGTCTCTGAGTGAATGTTCTCCATCATCATTTGGAAGCCATAG 925 Query 133234 AAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTG 133293 || || || || || || || | ||| | ||| | || | | || || |||||| Sbjct 926 AAACAGCGTGCTTCTGGAACTTGGATTTCAGTACAGAATCTCTGGGCGAGGTTCTCGTTG 985 Query 133294 ACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTG 133353 ||||| ||||| ||| ||||| || || || ||||||||||| || || | ||||||| Sbjct 986 ACGATTCCGTCTGAGGCAGCGAAGAAAGCAAGGACGTGCTTGATAAAGTGTCTCTCGTTG 1045 Query 133354 TCGTTCAAGCGCTCCCAGTC 133373 || || | | |||||| || Sbjct 1046 TCATTGAGTCTCTCCCAATC 1065 >seq14202 Length=1113 Score = 129 bits (142), Expect = 6e-25 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 38240 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGC 38299 ||| ||| |||| ||||| || || ||||| ||||| |||||||| | || || ||| | Sbjct 194 AAACATGTAAATTTTCGTTAAGACTCTCACTGGCAAGACCATCACTCTTGATGTTGAGCC 253 Query 38300 CACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 | || | | | ||| | || | || |||| |||||||||||||| || |||| Sbjct 254 ATCAGATACCATTGAAAATGTCAAGGCTAAGATCCAAGACAAAGAGGGAATCCCACCCGA 313 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 |||||| | ||||||| ||| || || ||| |||| |||| | |||||| |||||| Sbjct 314 TCAACAGAGACTCATTTTCGCTGGAAAGCAGTTGGAAGACGGCAGAACCCTCTCCGACTA 373 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||||| ||||| | || || || ||||| || | | ||||| || Sbjct 374 CAACATCCAGAAGGAGTCAACCCTTCACTTGGTCTTGAGACTCAGAGGAGG 424 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||| | || ||||| || || | || || || || ||||| | |||||||| | || Sbjct 654 ATGTAGATCTTCGTGAAGACCTTGACCGGTAAGACTATCACTTTGGACGTCGAACCATCC 713 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | |||| || |||| ||||| || || ||||| |||| ||| Sbjct 714 GACACCATCGAGAATGTCAAAGCCAAGATCCAGGACAAGGAAGGTATTCCACCCGATCAA 773 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || | ||||| | ||| || ||||| || || |||| | || | | |||||||||| Sbjct 774 CAAAGACTCATCTTCGCCGGTAAACAACTTGAAGACGGCAGAACTTTGAGCGACTACAAC 833 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCT 38455 ||||||||||| | || || || ||||| || Sbjct 834 ATCCAAAAGGAGTCTACTCTCCACTTGGTCCT 865 >seq18203 Length=1365 Score = 123 bits (136), Expect = 2e-23 Identities = 157/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 38240 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGC 38299 ||| |||||||| ||||| || || ||||| ||||| |||||||| | ||||| ||| | Sbjct 174 AAACATGCAAATCTTCGTTAAGACCCTCACAGGCAAGACCATCACTTTGGACGTTGAGCC 233 Query 38300 CACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 | | |||| | | ||| | || | || |||| ||||| || ||||| || |||| Sbjct 234 CTCTGACACCATCGAAAATGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCACCCGA 293 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||||| | ||||| | ||| ||||| || || || |||| | ||| | |||||| Sbjct 294 TCAACAAAGACTCATCTTCGCTGGCAAGCAACTCGAAGACGGAAGAACCTTGTCCGACTA 353 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCT 38455 ||||||||| |||||| | || || || ||||| || Sbjct 354 CAACATCCAGAAGGAATCAACCCTTCACTTGGTTCT 389 Score = 116 bits (128), Expect = 4e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || ||||| || || |||||||| | ||||| ||| | | Sbjct 406 ATGCAAATCTTCGTGAAGACCCTCACTGGAAAGACCATCACTTTGGACGTTGAGCCATCA 465 Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | ||||| | || | || |||| || || || || |||||| |||| || Sbjct 466 GACACTATTGAAAACG-TCAAGGCCAAGATCCAAGATAAGGAAGGTATTCCCCCCGATCA 524 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| | ||||||| || || || || || || || | | ||||| | |||||||| Sbjct 525 ACAAAGACTCATTTTTGCTGGAAAGCAACTTGAAGATGGAAGAACCCTTAGTGACTACAA 584 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||||||||| | || || || ||||| || | |||||||| || Sbjct 585 CATCCAAAAGGAGTCAACCCTTCACTTGGTCCTCAGATTGAGAGGTGG 632 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || || || || || ||||||||| | ||||||||| | | Sbjct 634 ATGCAAATCTTCGTCAAGACCCTTACCGGAAAGACCATCACCTTGGACGTCGAGCCTTCA 693 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | | || | ||| |||| ||||| || || || || |||| ||| Sbjct 694 GATACCATTGAGAATGTCAAGGCAAAGATCCAAGACAAGGAAGGTATCCCACCCGATCAA 753 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || | ||||| | ||| || || || || || || | | || || ||||||||| Sbjct 754 CAAAGACTCATCTTCGCCGGAAAGCAACTTGAAGATGGCAGAACTCTTTCAGACTACAAC 813 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| || ||| | || || |||||||| || | |||||||| || Sbjct 814 ATCCAGAAAGAATCTACTCTTCATTTGGTCCTCAGATTGAGAGGTGG 860 Score = 102 bits (112), Expect = 8e-17 Identities = 152/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || ||||| || || ||||||||| |||| || ||| | | Sbjct 862 ATGCAAATCTTCGTCAAGACCCTCACCGGAAAGACCATCACCCTCGATGTTGAGCCATCA 921 Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | ||||| | || | || ||| ||||| || || || || |||| || Sbjct 922 GACACCATTGAAAACG-TGAAGGCCAAGATCTAGGACAAGGAAGGTATCCCACCCGATCA 980 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| | || || | ||| || || || || || |||| | ||| | ||||||||| Sbjct 981 ACAAAGACTTATCTTCGCTGGTAAGCAACTTGAAGACGGCAGAACCTTGTCCGACTACAA 1040 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCT 38455 |||||||||||| | || || || ||||| || Sbjct 1041 CATCCAAAAGGAGTCAACTCTCCACTTGGTCCT 1073 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500032388990720