Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F001297925.1_202015-09-23] 22,458 sequences; 57,457,034 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq1053 183 4e-41 seq22165 116 5e-21 >seq1053 Length=3228 Score = 183 bits (202), Expect = 4e-41 Identities = 745/1146 (65%), Gaps = 55/1146 (5%) Strand=Plus/Plus Query 111528 AGAGACTACGACTTTGGTTATTTTGGTCTCAAGACCCTCGAGAAAAGCT-ACCTCC--AA 111584 ||||||||| ||| || ||||||||| ||| || | || || |||| |||| | || Sbjct 816 AGAGACTACAACTATGACTATTTTGGTTTCAGAACATTGGA-AAGAGCTTACCTTCTTAA 874 Query 111585 AGACTGG--ATGGTGTC-TTGATGGAAACCCCACAGTACATGTTCATGCGGGTCGCGATC 111641 ||| ||| | || |||| || ||||| ||||| | ||| | || || Sbjct 875 AGA-TGGCAACCAAATCCTTGAGAGA----CCACAACACATGCTTATGAGAGTAAGTATT 929 Query 111642 GGTATCCATGGGGAAGATATTGATTCTGTTTTGGAGACATACGACAAGATG--TC--CCG 111697 ||||| ||| ||||| |||| || | || ||||| ||||| |||| || | | Sbjct 930 GGTATTCATAAAGAAGACCTTGAGTCAGCGTTCGAGACTTACGATTTGATGAGTCAACTG 989 Query 111698 TGGTATGTTCATCCACGCAACACCAACCCTCTTCAACGCTGGTACACCAAGACCCCAAAT 111757 |||| | |||| || || || || || || ||| |||| ||||||| ||| | || Sbjct 990 TGGTTTACTCAT----GCCACTCCTACTCTGTTTAACTCTGGAACACCAAAACCATAGAT 1045 Query 111758 GTCCAGTTGTTTCCTTATTGCAAAC----AAGGAGGATTCAATCAATGGCATTTACGGCA 111813 | |||| || | || |||| ||| || || || || || |||| || | | | Sbjct 1046 G---AGTTCTTGC-TTCTTGCTAACTGTAAAAGAAGACTCCATTGATGGTATCTTTGAAA 1101 Query 111814 CTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGGTGGTATCGGGATG-CACA-TCCA 111871 || | | || ||| ||||||||| |||||||||||||| || || ||| Sbjct 1102 CTTTAAAATAAATTGCTATTATCTCAAAGGCTGCTGGTGGTATCGGAGTGTCAGTGTCC- 1160 Query 111872 TGATGTCAGAGCCAACAAGTCTCGTATTAGAGGTACAAATGGTCAATCAGATGGTATTAT 111931 ||||| ||||| | || || ||||||||||| || | ||| |||| | || Sbjct 1161 -GATGTTAGAGCTGCTGACTCCTACATCAGAGGTACAAACGGATATTCAAATGGATTGAT 1219 Query 111932 TCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAACCAAGCTGGGCGTC---G 111988 ||||||| | || || || | ||| || | || || | ||| ||| | | Sbjct 1220 TCCAATGTTGAAGGTCTTCAATGACACCGCAAGATACGTCGATTAAGGTGGTGGAAAAAG 1279 Query 111989 CAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGA 112048 |||||| || |||| |||||| |||| ||||||||||| |||||| || |||||| | Sbjct 1280 AAAGGGAGCTTTCGCTGTCTATGTTGAACCATGGCACGCTGATATCTACGACTTCCTTTA 1339 Query 112049 GTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTG 112108 | | || || ||| | || ||| | | || || |||| |||||| || Sbjct 1340 ACTTAGAAAGAATCACGGTAAGGAAGAGAATAGAGCTAGAGACCTTTTCTACGCTCTTTG 1399 Query 112109 GATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCC 112168 || ||||||||| ||||||| |||||||| | | || ||||| |||| | ||||| Sbjct 1400 GACTCCAGATCTTTTCATGAGAAGAGTTGAAGCAAATGAAGATTGGACTCTGATGTGTCC 1459 Query 112169 AGA-CAAGGCACCCGGTCTCTCCGATGCCGTGGGTGAGGAGTTTGAAGCCCTCTACACAA 112227 | | || || || || || | | | ||||||||||||||| || |||| Sbjct 1460 AAATGAATGC-CCAGGACTTACTACTACATGGGGTGAGGAGTTTGAGAAACTTTACATCG 1518 Query 112228 AGTACGA-------GGAAGAAAGTCGGGCGACTGCGACGGTGCCAGCTGCCGATGTGTGG 112280 |||| || || || | |||| |||| | | || || || | | || || Sbjct 1519 AGTATGAGACCACTGGTAG-AGGTCGCAAAACTGTTAAG--GCTAGATG--GCTCTGGGG 1573 Query 112281 AAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATATATGCTTTACAAAGACGCC 112340 | || | ||||||||| |||||||||||| || |||||||| |||||||| || Sbjct 1574 TTA--AATCATAGAGTCTCAAAACGAGACTGGTACTCCTTATATGCTCTACAAAGATGCT 1631 Query 112341 TGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAACCTCTGTACA 112400 || || ||| ||| | | ||| | || || |||||||| ||||| || || Sbjct 1632 TGCAATAGAAAATCTAACTAGTAAAATCTTGGCACAATTAAGAGTTCTAACCTTTGCACT 1691 Query 112401 GAAATCTTGGAATTTA-CAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGC 112459 || ||| | ||||||| ||| | ||||| |||||| |||||||| || || || || Sbjct 1692 GAGATCGTCGAATTTACCAGTC-CCGATGAAGTGGCTGTCTGTAACCTAGCTTCTATTGC 1750 Query 112460 TCTCCCCAAGTATGTGGATCCAGAGA-CAAAGACATTTGATTATGAAAAACTCCACGAAG 112518 | | | | ||| || | | |||| || ||||||||| || | || | | Sbjct 1751 TTTAAATAGATTCGTGTTAAAGGAAACCTAAGA-ATATGATTATGAGAAGTTACATTACG 1809 Query 112519 TTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGTTG 112578 | || || | | || || || ||||| | | |||| |||| |||| || || ||| Sbjct 1810 TGACCAAGAGAATTACTAAGAATCTAAATAAAATTATAGATAACAATTACTATCCTGTTC 1869 Query 112579 AGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTCCAAGGTCTCG 112638 ||| | || || ||| | |||||| | |||||||| | |||||| |||| | | Sbjct 1870 CTGAAGCTAGAAATTCAAATCTTAGACACAGACCAATTGGAATTGGTGTCTAAGGATTTG 1929 Query 112639 CGGATG 112644 | |||| Sbjct 1930 CAGATG 1935 >seq22165 Length=1746 Score = 116 bits (128), Expect = 5e-21 Identities = 172/237 (73%), Gaps = 5/237 (2%) Strand=Plus/Minus Query 102078 GAGAAGAAGCAGCTCTTTGAAGCCATC-CAAACAGTTCCATGTATTCAAAAGAAAGCGGA 102136 |||||| || ||||| |||||||| | |||| | ||| | | ||||| || || Sbjct 843 GAGAAGGAGTTCCTCTTCAAAGCCATCACTAACA-TCCCAGTTGTAACTAAGAAGGCTGA 785 Query 102137 TTGGGCTATGAAGTGGTTTGATACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATT 102196 ||||| || |||||| ||| | | || ||| | ||| |||||| |||| | || || Sbjct 784 ATGGGCCATTAAGTGGATTGGTG-AGAG-CGC-TAGCTTCGCTGAGAGACTAATTGCTTT 728 Query 102197 TGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAA 102256 || | ||||| ||||||||||| || ||||||||| | || | ||||| ||||| Sbjct 727 CGCTGCCATCGAGGGCATCTTCTTCTCAGGATCCTTCTGCTCAATCTTCTGGCTTAAGAA 668 Query 102257 GCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGG 102313 ||| || ||||||||||||||| |||||| || ||||| || || | ||||| || Sbjct 667 GCGTGGCCTCATGCCAGGTCTCACCTTCTCAAATGAGCTCATTTCAAGAGACGAAGG 611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620568142089760