Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F001297925.1_202015-09-23] 22,458 sequences; 57,457,034 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq1053 87.8 2e-12 >seq1053 Length=3228 Score = 87.8 bits (96), Expect = 2e-12 Identities = 392/610 (64%), Gaps = 31/610 (5%) Strand=Plus/Minus Query 110608 TCAACCCTCTTCATGAACAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGA 110667 ||||| || ||||||| || || ||| |||| | || |||||||||| | | | Sbjct 1429 TCAACTCTTCTCATGAAAAGATCTGGAGTCCAAAGAGCGTAGAAAAGGTCTCTAGCTCTA 1370 Query 110668 GCCTCTTCATCACCTTGGTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCAT 110727 |||||| | ||| || || | || | | ||||| |||||| | ||||||| Sbjct 1369 TTCTCTTCCTTACCGTGATTCTTTCTAAGTTAAAGGAAGTCGTAGATATCAGCGTGCCAT 1310 Query 110728 GGTTCGAGATAGACAGCGATGGATCCCTTAC---GACGACCCGCCTGGTTAACATAGCGT 110784 ||||| | ||||||||||| | |||||| | | ||| | | | || || | | Sbjct 1309 GGTTCAACATAGACAGCGAAAGCTCCCTTTCTTTTTCCACCACCTTAATCGACGTATCTT 1250 Query 110785 GCTGTGGCATTGAAGACCCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCC 110844 || ||| ||||||||||| | | ||| ||||| | ||||| || | || |||||||| Sbjct 1249 GCGGTGTCATTGAAGACCTTCAACATTGGAATCAATCCATTTGAATATCCGTTTGTACCT 1190 Query 110845 CTAATTCTGGACTTATTGGCACGAATGTCGTGGATA-TG-CATACCAATACCACCCGCCC 110902 || || ||| | | || | || || ||| | || || || |||||||| || Sbjct 1189 CTGATGTAGGAGTCAGCAGCTCTAACATC--GGACACTGACACTCCGATACCACCAGCAG 1132 Query 110903 ACTTACTAATTTGTGCACACTCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCT 110962 ||| || ||| | | | | || || | ||||||||||| || ||| | | Sbjct 1131 CCTTTGAGATAATAGCAATTTATTTTAAAGTTTCAAAGATACCATCAATGGAGTCTTCTT 1072 Query 110963 T----GTTGGCAATTAGAAAGCAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAG 111018 | ||| |||| ||||||||| ||||| || || ||||| | || || Sbjct 1071 TTACAGTTAGCAA----GAAGCAAGAACTCATCTATGGTTTTGGTGTTCCAGAGTTAAAC 1016 Query 111019 AGTGTAGGTGTCGCATGAATGAACAGACCTTGGGACATCTTGTTGTATGTGTCGAGTGCG 111078 || ||||| || |||||| | ||| ||| |||| | ||| || |||| || Sbjct 1015 AGAGTAGGAGTGGCATGAGTAAACCACAGTTGACTCATCAAATCGTAAGTCTCGAACGCT 956 Query 111079 G----AGGGTACATCTTTACCGTGAATACCAATGGCAACTCGCATGAACATATATTGAGG 111134 | | ||| | |||||| ||||||||||| |||| ||| | ||| | ||| || Sbjct 955 GACTCAAGGT-CTTCTTTA---TGAATACCAATACTTACTCTCATAAGCATGTGTTGTGG 900 Query 111135 CGTTTC---GATTAGCTTTCCATCAACACGCTGAAGGTAA-CTCTTCTCTAGGGTCTTGA 111190 | || |||| | || ||||| | |||||||| ||||| || | || ||| Sbjct 899 TCTCTCAAGGATTTGGTTGCCATCTTTA---AGAAGGTAAGCTCTT-TCCAATGTTCTGA 844 Query 111191 GACCAAAGTA 111200 |||||| || Sbjct 843 AACCAAAATA 834 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588810659712400