Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F001297925.1_202015-09-23] 22,458 sequences; 57,457,034 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq14466 168 8e-37 seq1053 141 1e-28 seq22165 100 3e-16 >seq14466 Length=3412 Score = 168 bits (186), Expect = 8e-37 Identities = 667/1044 (64%), Gaps = 23/1044 (2%) Strand=Plus/Minus Query 106278 CATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCG 106337 |||| || |||||||||| ||| | ||| || |||||||||| ||| || || ||| | Sbjct 2171 CATCAGCCAGACCTTGAATACCGATACCGATTGGTCTGTGTCTCATGTTTGAGTTTTTGG 2112 Query 106338 CAGTCTCAACG---GGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAA 106394 | ||| || ||||| || || | ||| |||| || ||| | || |||| | Sbjct 2111 CT---TCATCGCATGGATAGAAGTTGCCGTCGATGATTCTGTTCAAGTTAATGGTGATTT 2055 Query 106395 TCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACT 106454 | || | || |||||||| ||||| || || || | || || ||||| Sbjct 2054 GATAAGTAACTTTGTGAAGTTTCTCATAGTCGAAGACGCCA------TCCTTTACATATC 2001 Query 106455 TTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTA 106514 | || || | || || || | ||||||||||| ||||| |||||||| | Sbjct 2000 TAGGTAGAGATATGGAAGCAAGGTTGCAAACAGCTACTTCATCTGGTGAGGTGTACTCGA 1941 Query 106515 AAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTT 106574 ||| || ||||| |||||||| || || || || | ||||||||||| ||||| Sbjct 1940 TAATCTCACAGCACAAATTGGAACTTTTGATGGTTCCGAGGTTCTTTTGGTTGCTCTTGC 1881 Query 106575 TGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAA 106634 ||||| |||||| || | |||||| || || || || || | ||||| | | || Sbjct 1880 TGTTGGCGTGATCCTTATACAACATGTATGGAGTTCCAGTTTCGATTTGTGATTCAATAA 1821 Query 106635 TTGCCTTCCACACATCGGCGGCTGGTACAATGGCGTTGGCCC--GTCCCTCCGCCTCGTA 106692 | || | ||| | | ||| | || || | || || ||| | ||| || Sbjct 1820 TGGCTTCCCAAAGTTTTTGAGCT--TTCATTGTCTTTCTACCAATTCCTTATTGCTCATA 1763 Query 106693 CTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTC 106752 ||| ||||| || ||||| || || | ||| ||||| |||| || || | || Sbjct 1762 CTTAGTGTACAGTGCTTCGAATTCTTAACCATGAACGTCGAAGAGGCCCTTGGCTTCGTT 1703 Query 106753 TGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAAT 106812 || |||||||| | ||| | || | | | || | ||||||||| | ||||||||| Sbjct 1702 GGGGCAGAAAAGTGTCCAGTCTCCGTCAGCTTGGACTCTCTTCATGAATAAGTCTGGAAT 1643 Query 106813 CCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAA 106872 ||| || | | || | ||||| | || || | ||| || || || || Sbjct 1642 CCAGAGAGCGAAGAACAAGTCTCTTGCTCTTTGTTCCTCTTTACCGTGATTCTTTCTTAG 1583 Query 106873 CTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTT 106932 | |||||| || | || ||| ||||||||||| || | || | |||| || ||||| Sbjct 1582 TTGAAGGAAATCGAAGACATCTGCGTGCCATGGTTCCAAGTATATAGCGAATGAACCCTT 1523 Query 106933 TC---GACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGG 106989 || | || |||| | ||||| | || || | || || || | |||||||| Sbjct 1522 TCTCTTGCCACCTCCTTGGTCGACATATCTAGCAGTCTCATTGAAAACTCTGAGCATTGG 1463 Query 106990 AATAATACCAT--CTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACA 107047 | | |||| ||| |||||||| || ||| || | | | ||||| | Sbjct 1462 CACGAGGCCATTACTG--TGACCATTGGTGCCCTTGATGTAACTGCCAGTAGCTCTGATG 1405 Query 107048 TCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGA 107107 | || | || || | ||| ||||| | ||||| || | || | | | || Sbjct 1404 TTGTGAACAGCCAGACCCACACCACCAGCTGATTTTGAAATCAGTGCGATGTTCTTGAGG 1345 Query 107108 GTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATC 107167 || |||||||||||||||||||||| ||||| | | ||||||||||||||||| Sbjct 1344 GTATCATAGATACCGTTGATTGAGTCGTCCTTCATCATAAGGAGGAAGCAACTGGACATT 1285 Query 107168 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG 107227 | || | || || ||||||||||| | || || || || ||| | ||| | | Sbjct 1284 TATGGCTTGGGAGTTCCAGCATTGAACAAAGTAGGAGTAGCATGAGTAAACCATCTGTCA 1225 Query 107228 GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCC 107287 ||| || ||| || || | | | ||||| || || | | |||||| || | | | Sbjct 1224 CTCATGAGGTTGTAAGTTTCAATGGCTGAATCGATATCCTTCTTGTGGATACCTACAGAC 1165 Query 107288 ACACGCATAAACATGTATTGGGGT 107311 || | ||| ||||||| || ||| Sbjct 1164 ACTCTCATCAACATGTGCTGTGGT 1141 >seq1053 Length=3228 Score = 141 bits (156), Expect = 1e-28 Identities = 539/832 (65%), Gaps = 28/832 (3%) Strand=Plus/Minus Query 106517 ATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTG 106576 || || || || | ||| ||||||||||| || || | ||| | | |||| ||| | Sbjct 1696 ATCTCAGTGCAAAGGTTAGAACTCTTAATTGTGCCAAGATTTTACTAGTTAGATTTTCTA 1637 Query 106577 TTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATT 106636 ||||| ||||| ||||||||||| || || || || ||||| | || |||| | ||| Sbjct 1636 TTGCAAGCATCTTTGTAGAGCATATAAGGAGTACCAGTCTCGTTTTGAGACTCTATGATT 1577 Query 106637 GCCTTCCACA--CATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACT 106694 ||| | |||| || ||| | | | | || | ||| |||| Sbjct 1576 TAACCCCAGAGCCATCTA--GCCTTAACAGTTTTGCGACCTCTACCAGTGGTCTCATACT 1519 Query 106695 TTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAG--AGACCTGGTGCCTTG-T 106751 |||| || ||||||||||||||| | || | || || ||||| || || | Sbjct 1518 CGATGTAAAGTTTCTCAAACTCCTCACCC--CATGTAGTAGTAAGTCCTGG-GCATTCAT 1462 Query 106752 CTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAA 106811 |||||| | |||| ||| | || | ||||| | |||||||||| |||||| Sbjct 1461 TTGGACACATCAGAGTCCAATCTTCATTTGCTTCAACTCTTCTCATGAAAAGATCTGGAG 1402 Query 106812 TCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTA 106871 |||| || | | || || |||||| | | |||||| | ||| || || || | Sbjct 1401 TCCAAAGAGCGTAGAAAAGGTCTCTAGCTCTATTCTCTTCCTTACCGTGATTCTTTCTAA 1342 Query 106872 ACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCT 106931 | |||||| || |||||| ||||||||||| |||| |||||| |||| || ||||| Sbjct 1341 GTTAAAGGAAGTCGTAGATATCAGCGTGCCATGGTTCAACATAGACAGCGAAAGCTCCCT 1282 Query 106932 TTC---GACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTG 106988 ||| | ||| ||| || || || | || ||| | || || || | ||||| Sbjct 1281 TTCTTTTTCCACCACCTTAATCGACGTATCTTGCGGTGTCATTGAAGACCTTCAACATTG 1222 Query 106989 GAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACAT 107048 |||| | |||| ||| | || ||||| || | || || | | ||||| |||| Sbjct 1221 GAATCAATCCATTTGAATATCCGTTTGTACCTCTGATGTAGGAGTCAGCAGCTCTAACAT 1162 Query 107049 CATGGA-TGTG-CATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAG 107106 | ||| || || || ||||| ||||| ||||||||| ||| | | | Sbjct 1161 C--GGACACTGACACTCCGATACCACCAGCAGCCTTTGAGATAATAGCAATTTATTTTAA 1104 Query 107107 AGTTCCATAGATACCGTTGATTGAGTCCTCCTT----GTTGGCGATAAGGAAGCAACTGG 107162 |||| || ||||||| | || ||||| || || ||| || | ||| ||| |||| Sbjct 1103 AGTTTCAAAGATACCATCAATGGAGTCTTCTTTTACAGTTAGCAAGAAGCAAG-AACT-- 1047 Query 107163 ACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATAC 107222 ||||| ||| ||||||| |||| || || || || || || || ||| | ||| Sbjct 1046 -CATCTATGGTTTTGGTGTTCCAGAGTTAAACAGAGTAGGAGTGGCATGAGTAAACCACA 988 Query 107223 CTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGA 107282 ||| |||| ||||| ||||| || | || |||| |||||| || || || | Sbjct 987 GTTGACTCATCAAATCGTAAGTCTCGAACGCTGACTCAAGGTCTTCTTTATGAATACCAA 928 Query 107283 TGGCCACACGCATAAACATGTATTGGGGTGTTTCCATGA---GGATGCCATC 107331 | || | ||||| ||||| ||| ||| | || | || || ||||||| Sbjct 927 TACTTACTCTCATAAGCATGTGTTGTGGTCTCTCAAGGATTTGGTTGCCATC 876 >seq22165 Length=1746 Score = 100 bits (110), Expect = 3e-16 Identities = 138/190 (73%), Gaps = 5/190 (3%) Strand=Plus/Plus Query 117291 ACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCCCGCTT 117350 ||| || |||| ||||| || |||||||||||| || ||||||||||| || ||||| Sbjct 610 ACCTTCGTCTCTTGAAATGAGCTCATTTGAGAAGGTGAGACCTGGCATGAGGCCACGCTT 669 Query 117351 CTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAA 117410 ||| | ||| | || | |||||| || || ||||||||||| ||||| | || || Sbjct 670 CTTAAGCCAGAAGATTGAGCAGAAGGATCCTGAGAAGAAGATGCCCTCGATGGCAGCGAA 729 Query 117411 CGCAAAAAGGCGCTCGGCGAAG-GAGCGAGACTTTGTGTCAAACCATTTCATTGCCCATT 117469 |||| || | ||| |||||| |||| || | ||| ||| || || ||||||| Sbjct 730 AGCAATTAGTCTCTCAGCGAAGCTAGCG---CTCT-CACCAATCCACTTAATGGCCCATT 785 Query 117470 TCGCCTTCTT 117479 |||||||| Sbjct 786 CAGCCTTCTT 795 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589815177639920