Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F001297925.1_202015-09-23] 22,458 sequences; 57,457,034 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq3546 131 2e-25 >seq3546 Length=3566 Score = 131 bits (144), Expect = 2e-25 Identities = 194/273 (71%), Gaps = 8/273 (3%) Strand=Plus/Plus Query 153732 GGTGAGTGGGGATTTGATATTGCTGTAGGTAGTATGCAAAGGTTTGGTATTCCTATGGGA 153791 ||||| |||| |||||||||| | || | | |||| |||||| | ||||||| Sbjct 1250 GGTGAAATGGGAGTTGATATTGCAATTGGATCTGTATAAAGATTTGGTGTACCTATGGCC 1309 Query 153792 TATGGAGGTCCTCATGCTGCAT-TCT---TTGCAACAACAGACAAGTATAAGAGAAAGAT 153847 ||||| ||||| ||| | | | | | |||||| ||| | | |||||||||||| Sbjct 1310 TATGGTGGTCCCCATCCAGGTTATATGGCTTGCAA----AGATGAATTTAAGAGAAAGAT 1365 Query 153848 ACCTGGCAGAATTGTAGGTCAGTCAGTAGATAGTGAAGGTAATAAAGCATACAGATTAGC 153907 || || | || | ||| ||| | ||| ||||| | ||||| |||||| | || Sbjct 1366 GCCAGGTCGTCTTATCGGTGTCTCAATTGATGCCCAAGGTGACAAAGCTTACAGAATGGC 1425 Query 153908 ACTACAGACTAGAGAGCAGCATATCAGGAGAGACAAAGCAACCAGTAACATCTGCACAGC 153967 || || || ||||| ||||||||||| |||||||| |||||| ||||| ||||| || Sbjct 1426 TCTCCAAACCAGAGAACAGCATATCAGAAGAGACAAGGCAACCTCAAACATTTGCACTGC 1485 Query 153968 TCAGGCACTGCTGGCTAATATGTCTGGATTCTA 154000 ||| || || || ||||| || |||| ||||| Sbjct 1486 TCAAGCCCTTCTTGCTAACATTTCTGCTTTCTA 1518 Score = 98.7 bits (108), Expect = 1e-15 Identities = 162/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 153215 AGGATACTATGGAACCATTACACCCCCAGTCATA-CAGC-GAAACGTTCTTGAGAATCCT 153272 ||| |||||| ||| | ||||||||||| || ||| | || |||||||| ||||| Sbjct 733 AGGTTACTATCCAACTA--ACACCCCCAGTGTTATCAGAAGGAATGTTCTTGAAAATCCA 790 Query 153273 AGTTGGTACACATCTTACACTCCCTATCAAGCTGAGATATCTCAGGGAAGATTGGAAGCT 153332 | ||||||||| ||||||| ||||||||||||||||| |||| || ||| | ||| | Sbjct 791 AACTGGTACACACCTTACACCCCCTATCAAGCTGAGATCGCTCAAGGTAGACTAGAATCC 850 Query 153333 TTATTCAATTACCAAACGCTCATCACAGAACTTACAGGATTACCAATAGCAAACGCATCT 153392 |||| || | |||||| | | || || | || | | | | || || ||| Sbjct 851 CTATTAAACTTCCAAACTATGGTGACTGAGTTAACCAAACTCGACGTCTCTAATGCTTCT 910 Query 153393 CTATTAGATGAAGCAACTGCAGCAGCAGAAGCAATGCTATTAGCATATAA 153442 || || ||||| || ||| |||| || || | ||| | | |||||||| Sbjct 911 CTCTTGGATGAGGCTACTTCAGCTGCTGAGACTATGTTTATGGCATATAA 960 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579050200486720