Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F001297925.1_202015-09-23] 22,458 sequences; 57,457,034 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq3546 131 2e-25 >seq3546 Length=3566 Score = 131 bits (144), Expect = 2e-25 Identities = 194/273 (71%), Gaps = 8/273 (3%) Strand=Plus/Plus Query 158407 GGTGAGTGGGGATTTGACATTGCTGTAGGTAGTATGCAAAGGTTTGGTATTCCTATGGGA 158466 ||||| |||| |||| ||||| | || | | |||| |||||| | ||||||| Sbjct 1250 GGTGAAATGGGAGTTGATATTGCAATTGGATCTGTATAAAGATTTGGTGTACCTATGGCC 1309 Query 158467 TACGGAGGTCCTCATGCTGCAT-TCT---TTGCAACAACAGACAAGTATAAGAGAAAGAT 158522 || || ||||| ||| | | | | | |||||| ||| | | |||||||||||| Sbjct 1310 TATGGTGGTCCCCATCCAGGTTATATGGCTTGCAA----AGATGAATTTAAGAGAAAGAT 1365 Query 158523 ACCTGGCAGAATTGTAGGTCAGTCAGTAGATAGCGAAGGTAATAAAGCATACAGATTAGC 158582 || || | || | ||| ||| | ||| | ||||| | ||||| |||||| | || Sbjct 1366 GCCAGGTCGTCTTATCGGTGTCTCAATTGATGCCCAAGGTGACAAAGCTTACAGAATGGC 1425 Query 158583 ACTACAGACTAGAGAGCAGCATATCAGAAGAGACAAAGCAACCAGTAACATCTGCACAGC 158642 || || || ||||| |||||||||||||||||||| |||||| ||||| ||||| || Sbjct 1426 TCTCCAAACCAGAGAACAGCATATCAGAAGAGACAAGGCAACCTCAAACATTTGCACTGC 1485 Query 158643 ACAAGCACTGCTGGCTAATATGTCTGGGTTCTA 158675 ||||| || || ||||| || |||| ||||| Sbjct 1486 TCAAGCCCTTCTTGCTAACATTTCTGCTTTCTA 1518 Score = 105 bits (116), Expect = 8e-18 Identities = 166/232 (72%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 157890 AGGATACTATGGAACCATCACACCCCCAGTCATA-CAGC-GAAACGTTCTTGAGAATCCT 157947 ||| |||||| ||| | ||||||||||| || ||| | || |||||||| ||||| Sbjct 733 AGGTTACTATCCAACTA--ACACCCCCAGTGTTATCAGAAGGAATGTTCTTGAAAATCCA 790 Query 157948 AGTTGGTACACATCTTACACTCCCTATCAAGCTGAGATATCTCAGGGAAGATTGGAAGCT 158007 | ||||||||| ||||||| ||||||||||||||||| |||| || ||| | ||| | Sbjct 791 AACTGGTACACACCTTACACCCCCTATCAAGCTGAGATCGCTCAAGGTAGACTAGAATCC 850 Query 158008 TTATTCAATTACCAAACGCTCATCACAGAACTCACAGGACTACCGA--TAGCAAACGCAT 158065 |||| || | |||||| | | || || | || ||| ||| | | || || | Sbjct 851 CTATTAAACTTCCAAACTATGGTGACTGAGTTAACCAAACT--CGACGTCTCTAATGCTT 908 Query 158066 CTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAATGCTGTTAGCATATAA 158117 |||| || ||||| || ||| |||| || || | ||| | | |||||||| Sbjct 909 CTCTCTTGGATGAGGCTACTTCAGCTGCTGAGACTATGTTTATGGCATATAA 960 Score = 84.2 bits (92), Expect = 3e-11 Identities = 112/153 (73%), Gaps = 2/153 (1%) Strand=Plus/Plus Query 160042 GATATAGCAAAGAGACTTATGGACTATGGATTCCATGCACCTACACTATCGTGGCCTGTG 160101 ||||| || ||||||||||||||||||||||||||||||||||| | || | || || Sbjct 2993 GATATTGCTAAGAGACTTATGGACTATGGATTCCATGCACCTACTGTTTCTTTCCCAGTT 3052 Query 160102 TTAGGAACTATGATGGTAGAACCAACAGAGTCTGAGTCACTTGA-TGAGTTGCAAAGATT 160160 |||| | | ||| | || ||||| |||||||| || || ||| || | ||||| Sbjct 3053 GCTGGAAGTCTCATGATTGAGCCAACTGAGTCTGA-AGACAAGATTGAAATGGACAGATT 3111 Query 160161 TGTTGATGCTATGGATAAAATAAAAAGAGAGAT 160193 | ||||| ||| | | ||| | | |||||| Sbjct 3112 CATCGATGCCATGAAGAGAATTAGAGAAGAGAT 3144 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 587886119326880