Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F001297925.1_202015-09-23] 22,458 sequences; 57,457,034 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq14202 100 2e-16 seq18203 91.5 1e-13 >seq14202 Length=1113 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 ||||| ||||| || | ||||||||||| || |||||| ||||| || ||||| ||| Sbjct 652 CCTCCTCTCAATCTAAGAACCAAGTGAAGGGTAGATTCTTTTTGAATATTGTAGTCTGAA 593 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 ||| ||| | |||| || || || || ||||| || || |||| ||| || || | || Sbjct 592 AGGGTTCTTCCATCTTCAAGTTGCTTGCCGGCGAAGATAAGTCTTTGTTGATCGGGTGGG 533 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | || || || || ||||| || ||| | | || | || | ||| || Sbjct 532 ATACCTTCTTTATCTTGGATCTTTGCCTTAACGTTTTCAATGGTGTCTGATGGCTCGACG 473 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || | ||| ||||| ||||| || || ||||| || ||||| |||||| Sbjct 472 TCAAGGGTGATGGTCTTTCCGGTAAGGGTCTTAACGAAGATTTGCATA 425 Score = 91.5 bits (100), Expect = 1e-13 Identities = 167/245 (68%), Gaps = 0/245 (0%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 ||||| || | ||||| |||||||||| || || ||||| ||||| ||||| || Sbjct 424 CCTCCTCTGAGTCTCAAGACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAGTCGGAG 365 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 ||| ||| | || |||| ||| ||||| || || || |||| || || || | || Sbjct 364 AGGGTTCTGCCGTCTTCCAACTGCTTTCCAGCGAAAATGAGTCTCTGTTGATCGGGTGGG 305 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | ||||| ||||| ||||| ||||| | | || | || | ||||||| Sbjct 304 ATTCCCTCTTTGTCTTGGATCTTAGCCTTGACATTTTCAATGGTATCTGATGGCTCAACA 245 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATTCGTAGACTTG 34994 || | || ||||| || || ||||||||||| || || || | ||| || || | ||| Sbjct 244 TCAAGAGTGATGGTCTTGCCAGTGAGAGTCTTAACGAAAATTTACATGTTTGTTGTTTTG 185 Query 34995 TCGTG 34999 | ||| Sbjct 184 TTGTG 180 >seq18203 Length=1365 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 ||||| || | || | ||||||||||| || ||| ||||| ||||| ||||| || Sbjct 404 CCTCCTCTGAGTCTGAGAACCAAGTGAAGGGTTGATTCCTTCTGGATGTTGTAGTCGGAC 345 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 | | ||| | | || || || || || || || || || |||| ||| || || | || Sbjct 344 AAGGTTCTTCCGTCTTCGAGTTGCTTGCCAGCGAAGATGAGTCTTTGTTGATCGGGTGGG 285 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | || |||||||| ||||| ||||| | | || | ||| || |||||| Sbjct 284 ATTCCTTCCTTGTCTTGGATCTTGGCCTTGACATTTTCGATGGTGTCAGAGGGCTCAACG 225 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 || | || ||||| || || ||||| ||||| || ||||| ||||| || Sbjct 224 TCCAAAGTGATGGTCTTGCCTGTGAGGGTCTTAACGAAGATTTGCATGTT 175 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324544745551824