Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F001297925.1_202015-09-23] 22,458 sequences; 57,457,034 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq14466 208 9e-49 seq1053 176 5e-39 seq22165 113 5e-20 >seq14466 Length=3412 Score = 208 bits (230), Expect = 9e-49 Identities = 530/802 (66%), Gaps = 12/802 (1%) Strand=Plus/Minus Query 48003 TCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGATTTCCAA 48062 ||||| || | ||| | || ||||||||||| || || |||||||| || | || |||| Sbjct 1869 TCCTTATACAACATGTATGGAGTTCCAGTTTCGATTTGTGATTCAATAATGGCTTCCCAA 1810 Query 48063 ACAGTCCTAGCCTTTATAACAGCTCTAGC--TTTATTATCATGTTCGTATTTAGTATATA 48120 | | ||| || || |||| | || |||| || || || ||||| || | Sbjct 1809 AGTTTTTGAGCTTTCATTGTCTTTCTACCAATTCCTTAT--TGCTCATACTTAGTGTACA 1752 Query 48121 ACTTCTCAAATTCATCCCCATACACATTATCTAA----CCCAGGACATTCATTAGGACAC 48176 || ||||| | |||| || | | || ||| | | ||| || || || Sbjct 1751 GTGCTTCGAATTCTTAACCATGAACGT---CGAAGAGGCCCTTGGC-TTCGTTGGGGCAG 1696 Query 48177 ATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGA 48236 | | || ||| || | ||| || ||||| |||| |||| ||||| ||||| ||| Sbjct 1695 AAAAGTGTCCAGTCTCCGTCAGCTTGGACTCTCTTCATGAATAAGTCTGGAATCCAGAGA 1636 Query 48237 GCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGA 48296 || | || || || || | |||| |||| || || || |||| || | |||| ||| Sbjct 1635 GCGAAGAACAAGTCTCTTGCTCTTTGTTCCTCTTTACCGTGATTCTTTCTTAGTTGAAGG 1576 Query 48297 AAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTA 48356 || || | | ||| || ||||||||||| || ||||| || | | ||| || || Sbjct 1575 AAATCGAAGACATCTGCGTGCCATGGTTCCAAGTATATAGCGAATGAACCCTTTCTCTTG 1516 Query 48357 TTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATA 48416 ||||||||| || | |||||| ||||| | || ||||||| | |||||| || | Sbjct 1515 CCACCTCCTTGGTCGACATATCTAGCAGTCTCATTGAAAACTCTGAGCATTGGCACGAGG 1456 Query 48417 CCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATT 48476 ||||| ||||||||| ||| || ||||| ||| ||||||| || || || Sbjct 1455 CCATTACTGTGACCATTGGTGCCCTTGATGTAACTGCCAGTAGCTCTGATGTTGTGAACA 1396 Query 48477 GAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAA 48536 | | ||| | |||||| || ||| || || || || || ||||||||||| Sbjct 1395 GCCAGACCCACACCACCAGCTGATTTTGAAATCAGTGCGATGTTCTTGAGGGTATCATAG 1336 Query 48537 ATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATGA 48596 || || | || || || |||| | | || || ||||| ||||||| || | Sbjct 1335 ATACCGTTGATTGAGTCGTCCTTCATCATAAGGAGGAAGCAACTGGACATTTATGGCTTG 1276 Query 48597 CAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAAT 48656 |||||| | ||| || || || |||| |||||| |||||||| | || | | Sbjct 1275 GGAGTTCCAGCATTGAACAAAGTAGGAGTAGCATGAGTAAACCATCTGTCACTCATGAGG 1216 Query 48657 TTATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATT 48716 || || |||||||| | ||||| |||||| | || ||||||| ||| || | ||| Sbjct 1215 TTGTAAGTTTCAATGGCTGAATCGATATCCTTCTTGTGGATACCTACAGACACTCTCATC 1156 Query 48717 AACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCC 48776 ||||| | || ||||| ||||| || || ||| | || || | || ||| | ||| Sbjct 1155 AACATGTGCTGTGGTCTCTCAACGATCTTAGAATTGACCTTTAATAAGTAGGATCTCTCC 1096 Query 48777 AATGTTTTAAAACCAAAATAGT 48798 || || ||||| || ||||||| Sbjct 1095 AAGGTCTTAAATCCGAAATAGT 1074 >seq1053 Length=3228 Score = 176 bits (194), Expect = 5e-39 Identities = 712/1113 (64%), Gaps = 26/1113 (2%) Strand=Plus/Minus Query 47702 ATCTGCCAATCCTTGAACACCAATACCAATTGGTCTATGAGTTTTATTAGAAAACTCAGC 47761 |||||| ||||||| |||||||| ||||||||||| || | ||| ||| ||| Sbjct 1934 ATCTGCAAATCCTTAGACACCAATTCCAATTGGTCTGTGTCTAAGATTTGAATTTCTAGC 1875 Query 47762 TTCTGGTAATGGATATTTGTTTATATCTATAATTTTATTTAGANNNNNNNNNNNNNNNNN 47821 ||| || | ||||| | || |||||||||||||||||||| Sbjct 1874 TTCAGGAACAGGATAGTAATTGTTATCTATAATTTTATTTAGATTCTTAGTAATTCTCTT 1815 Query 47822 NACAATTTCTCTTAATTTATTAAAATCAAA--CTT--GTTATTTATAACA--AACCTATT 47875 | | ||| || | | ||||| | ||| ||| | ||||| || ||||| Sbjct 1814 GGTCACGTAATGTAACTTCTCATAATCATATTCTTAGGTTTCCTTTAACACGAATCTATT 1755 Query 47876 AAGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTATATTGTATTAT 47935 | || ||||| ||||| ||||| ||||| || |||| ||| | ||| ||| | || Sbjct 1754 TAAAGCAATAGAAGCTAGGTTACAGACAGCCACTTCATCGGGACTGGTAAATTCGACGAT 1695 Query 47936 TTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATTATTNNNNTTGTT 47995 |||| || || ||| || || || || || | ||||| | ||| | || Sbjct 1694 CTCAGTGCAAAGGTTAGAACTCTTAATTGTGCCAAGATTTTACTAGTTAGATTTTCTATT 1635 Query 47996 ACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGA 48055 || || || ||||| |||||| |||| || ||||| || | ||||| || ||||| | Sbjct 1634 GCAAGCATCTTTGTAGAGCATATAAGGAGTACCAGTCTCGTTTTGAGACTCTATGATTTA 1575 Query 48056 TTTCCAAACAGTCCTAGCCTTTATAACAGCTCT---AGCTTTATTATCATGTTCGTATTT 48112 ||| | |||||||| ||||| | | | || || | || || | Sbjct 1574 ACCCCAGAGCCATCTAGCCTT---AACAGTTTTGCGACCTCTACCAGTGGTCTCATACTC 1518 Query 48113 AGTATATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGG 48172 | || | |||||||| || || || | | || | || || |||||||| || Sbjct 1517 GATGTAAAGTTTCTCAAACTCCTCACCCCATGTAGTAGTAAGTCCTGGGCATTCATTTGG 1458 Query 48173 ACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCA 48232 |||||||| | |||||| |||| || ||||| |||| || | |||||| |||| Sbjct 1457 ACACATCAGAGTCCAATCTTCATTTGCTTCAACTCTTCTCATGAAAAGATCTGGAGTCCA 1398 Query 48233 AAGAGC-TATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTT 48291 |||||| || ||| | || |||| ||| ||||| || || |||| || |||||| Sbjct 1397 AAGAGCGTAGAAA-AGGTCTCTAGCTCTATTCTCTTCCTTACCGTGATTCTTTCTAAGTT 1339 Query 48292 CAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTC 48351 ||| ||||| |||||||| ||||||||||| | ||| | || | | || || Sbjct 1338 AAAGGAAGTCGTAGATATCAGCGTGCCATGGTTCAACATAGACAGCGAAAGCTCCCTTTC 1279 Query 48352 GTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGA 48411 ||| ||| |||| ||| | ||||| || || | || | || | |||||||| | Sbjct 1278 TTTTTCCACCACCTTAATCGACGTATCTTGCGGTGTCATTGAAGACCTTCAACATTGGAA 1219 Query 48412 -CAATACCATTTG-ATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATT 48469 |||| ||||||| |||| || || || || || || || |||||| | || Sbjct 1218 TCAAT-CCATTTGAATAT-CCGTTTGTACCTCTGATGTAGGAGTCAGCAGCTCTAACATC 1161 Query 48470 ACTAATTGAAATACCTATACCACCTGC--CATTTTAGATATTAGAGCACACCGTTTAAGG 48527 | ||| | || |||||||| || | ||| ||||| | |||| ||| | Sbjct 1160 GGACACTGACACTCCGATACCACCAGCAGCCTTTGAGATA--ATAGCAATTTATTTTAAA 1103 Query 48528 GTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATT 48587 || ||| | || || || || || ||| | | | ||| | || ||| | ||| Sbjct 1102 GTTTCAAAGATACCATCAATGGAGTCTTCTTTTACAGTTAGCAAGAAGCAAGAACTCATC 1043 Query 48588 TGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAAC--CATTTCT 48645 | || | ||||| || ||||| | || |||| |||||| ||||| || || Sbjct 1042 TATGGTTTTGGTGTTCCAGAGTTAAACAGAGTAGGAGTGGCATGAGTAAACCACAGTTGA 983 Query 48646 CTGATAACAATTTATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAG 48705 || || ||| | || || || | | || || | || || ||| ||||| ||| Sbjct 982 CTCAT--CAAATCGTAAGTCTCGAACGCTGACTCAAGGTCTTCTTTATGAATACCAATAC 925 Query 48706 ATACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGAT 48765 ||| | ||| | ||| | ||| ||||| |||| |||| ||| ||| | ||| | Sbjct 924 TTACTCTCATAAGCATGTGTTGTGGTCTCTCAAGGATTTGGTTGCCATCTTTAAGAAGGT 865 Query 48766 ATGATTTTTCCAATGTTTTAAAACCAAAATAGT 48798 | | | ||||||||||| | ||||||||||||| Sbjct 864 AAGCTCTTTCCAATGTTCTGAAACCAAAATAGT 832 >seq22165 Length=1746 Score = 113 bits (124), Expect = 5e-20 Identities = 404/621 (65%), Gaps = 17/621 (3%) Strand=Plus/Plus Query 18961 CATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAA 19020 || ||||| ||| ||| | || |||||||| || | ||||| || || || | | Sbjct 590 CAAGCAAAGTCAGTATGCATACCTTCGTCTCTTGAAATGAGCTCATTTGAGAAGGTGAGA 649 Query 19021 CCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCA-AATGATCCAGAAAAGAA 19079 || ||||| || || | || || | |||||| || || ||| || ||||| || ||||| Sbjct 650 CCTGGCATGAGGCCACGCTTCTTAAGCCAGAAGATTGA-GCAGAAGGATCCTGAGAAGAA 708 Query 19080 TATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATG 19139 || || || | || || ||||||| |||||| || | | ||||| | | | Sbjct 709 GATGCCCTCGATGGCAGCGAAAGCAATTAGTCTCTCAGCGAAGCTAGCGC---TCTCACC 765 Query 19140 AATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATT 19199 |||||| || | ||||| ||||||||||| ||||| ||| || | || | || Sbjct 766 AATCCACTTAATGGCCCATTCAGCCTTCTTAGTTACAACTGGGATGTTAGTGATGGCTTT 825 Query 19200 AAATAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAA--ACT--GT 19255 || || || ||| | || || || ||| | || || | ||| || Sbjct 826 GAAGAGGAACTCCTTCTCGTGTGGGTC----ACTGATGAGGGTGTCGATGAGTACTGAGT 881 Query 19256 ACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTG 19315 | | ||||| ||||| || || || ||| || || || || ||||| | |||||||| Sbjct 882 AAGTCTCTGAGTGAATGTTCTCCATCATCATTTGGAAGCCATAGAAACAGCGTGCTTCTG 941 Query 19316 TTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAG 19375 | || | |||| |||| ||||| | | | | || || || || ||||| || | Sbjct 942 GAACTTGGATTTCAGTACAGAATCTCTGGGCGAGGTTCTCGTTGACGATTCCGTCTGAGG 1001 Query 19376 CTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTT-AATGTATTC 19434 | || || || || | || || || ||||| ||| | || | || || | | | | | Sbjct 1002 CAGCGAAGAAAGCAAGGACGTGCTTGATAAAGTGTCTCTCGT-TGTCATTGAGTCTCTCC 1060 Query 19435 CAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCC-TCTGC 19493 ||||| |||| ||| | | | || | ||| ||| ||||| |||| |||| |||| Sbjct 1061 CAATCTTTAACATCAGTGGCGAGGTCGATTTCCTCAGAGGTCCAGAAAGCAGCCATCTG- 1119 Query 19494 TTTTTTATACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAATCTATTTTT 19553 | || ||||| ||||| || || || | || |||| ||||||||||| ||| Sbjct 1120 GTCCTTGTACATCTTCCAGATGTCGTTGTACTTGATTGGAAGGATAACAAATCTGTTTGG 1179 Query 19554 ATTTTCTTTAAGAATAGGTTC 19574 || |||| |||| ||| || Sbjct 1180 GTTATCTTCGAGAAGAGGCTC 1200 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561951002007120