Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F001297925.1_202015-09-23] 22,458 sequences; 57,457,034 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq14202 134 1e-26 seq533 125 6e-24 seq18203 107 2e-18 >seq14202 Length=1113 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 |||||||| || | | ||| || |||||||||||||||||||| |||||||| || | Sbjct 652 CCTCCTCTCAATCTAAGAACCAAGTGAAGGGTAGATTCTTTTTGAATATTGTAGTCTGAA 593 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||||| |||| || | |||||| || || || || | | ||||||||||| || Sbjct 592 AGGGTTCTTCCATCTTCAAGTTGCTTGCCGGCGAAGATAAGTCTTTGTTGATCGGGTGGG 533 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || |||||||||||||| || ||| || || |||| | ||||| || | || || Sbjct 532 ATACCTTCTTTATCTTGGATCTTTGCCTTAACGTTTTCAATGGTGTCTGATGGCTCGACG 473 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| |||| || || ||||| | || || || || || ||||| Sbjct 472 TCAAGGGTGATGGTCTTTCCGGTAAGGGTCTTAACGAAGATTTGCAT 426 Score = 120 bits (132), Expect = 2e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 |||||||| | | || || || |||||||| || || || || || ||||| |||| | Sbjct 424 CCTCCTCTGAGTCTCAAGACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAGTCGGAG 365 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | |||||| | || ||||| ||||| || || || || | | |||||||||||| || Sbjct 364 AGGGTTCTGCCGTCTTCCAACTGCTTTCCAGCGAAAATGAGTCTCTGTTGATCGGGTGGG 305 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || || ||||| ||||| || || || ||| |||| | || || || | || || Sbjct 304 ATTCCCTCTTTGTCTTGGATCTTAGCCTTGACATTTTCAATGGTATCTGATGGCTCAACA 245 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATGGTT 101473 |||||||||| || ||||| || | ||| || || || || | |||| || Sbjct 244 TCAAGAGTGATGGTCTTGCCAGTGAGAGTCTTAACGAAAATTTACATGTTT 194 Score = 102 bits (112), Expect = 6e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || || || ||||| || ||||| || ||||| ||| | ||||||| | || || Sbjct 862 ACCAAGTGGAGAGTAGACTCCTTTTGGATGTTGTAGTCGCTCAAAGTTCTGCCGTCTTCA 803 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | ||| ||||| || || || | | ||||||||||| ||||| ||||| || || || Sbjct 802 AGTTGTTTACCGGCGAAGATGAGTCTTTGTTGATCGGGTGGAATACCTTCCTTGTCCTGG 743 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || ||| ||| | || | ||||| || | ||| || || | ||||| || || Sbjct 742 ATCTTGGCTTTGACATTCTCGATGGTGTCGGATGGTTCGACGTCCAAAGTGATAGTCTTA 683 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| || || || || || |||| ||| Sbjct 682 CCGGTCAAGGTCTTCACGAAGATCTACAT 654 >seq533 Length=4588 Score = 125 bits (138), Expect = 6e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 101258 AAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCG 101317 || || || || || || ||||||||||| || |||||||| | | |||||| | || Sbjct 4232 AAGACCAAGTGGAGAGTTGATTCTTTTTGGATGTTGTAATCAGACAAGGTTCTGCCGTCT 4291 Query 101318 TCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCT 101377 ||||| | ||| || ||||| || | | ||||||||| || ||||| |||||||| ||| Sbjct 4292 TCCAACTACTTTCCAGCAAAGATGAGTCTCTGTTGATCAGGGGGAATACCTTCTTTGTCT 4351 Query 101378 TGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTT 101437 ||||| || || || |||| | || ||||| | || || |||||||| | || Sbjct 4352 TGAATCTTGGCCTTAACGTTTTCGATGGTATCAGAAGGCTCTACATCAAGAGTAATAGTC 4411 Query 101438 TTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || ||||| ||||| || || || |||| ||| Sbjct 4412 TTACCGGTCAAAGTCTTGACGAAGATCTACAT 4443 >seq18203 Length=1365 Score = 107 bits (118), Expect = 2e-18 Identities = 163/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 |||||||| | | | ||| || |||||||| ||||| || || || ||||| |||| Sbjct 404 CCTCCTCTGAGTCTGAGAACCAAGTGAAGGGTTGATTCCTTCTGGATGTTGTAGTCGGAC 345 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||||| | || || | |||||| || || || || | | ||||||||||| || Sbjct 344 AAGGTTCTTCCGTCTTCGAGTTGCTTGCCAGCGAAGATGAGTCTTTGTTGATCGGGTGGG 285 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || ||||| || ||||| || || || ||| |||| | |||||||| | || || Sbjct 284 ATTCCTTCCTTGTCTTGGATCTTGGCCTTGACATTTTCGATGGTGTCAGAGGGCTCAACG 225 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATGGTTA 101474 || | ||||| || ||||| || | || || || || || |||||| ||| Sbjct 224 TCCAAAGTGATGGTCTTGCCTGTGAGGGTCTTAACGAAGATTTGCATGTTTA 173 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || ||||| || | | || |||||||| ||||||||||| || || ||||| || | Sbjct 860 CCACCTCTCAATCTGAGGACCAAATGAAGAGTAGATTCTTTCTGGATGTTGTAGTCTGAA 801 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||||||| |||| || | |||||| || || || || | | ||||||||||| || Sbjct 800 AGAGTTCTGCCATCTTCAAGTTGCTTTCCGGCGAAGATGAGTCTTTGTTGATCGGGTGGG 741 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || ||||| || ||||| || ||| || ||| | || | || || || | || || Sbjct 740 ATACCTTCCTTGTCTTGGATCTTTGCCTTGACATTCTCAATGGTATCTGAAGGCTCGACG 681 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || | |||| || || ||||| | || || || || || ||||| Sbjct 680 TCCAAGGTGATGGTCTTTCCGGTAAGGGTCTTGACGAAGATTTGCAT 634 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || ||||| || | | || || |||||||| || || ||||| || ||||| || Sbjct 632 CCACCTCTCAATCTGAGGACCAAGTGAAGGGTTGACTCCTTTTGGATGTTGTAGTCACTA 573 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||||| |||| || | |||||| || ||||| || | | ||||||||||| ||| Sbjct 572 AGGGTTCTTCCATCTTCAAGTTGCTTTCCAGCAAAAATGAGTCTTTGTTGATCGGGGGGA 513 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || ||||| |||||||| || || || || |||| | |||||| || | || || Sbjct 512 ATACCTTCCTTATCTTGGATCTTGGCCTTGACGTTTTCAATAGTGTCTGATGGCTCAACG 453 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || | ||||| || || || || | || || || || || ||||| Sbjct 452 TCCAAAGTGATGGTCTTTCCAGTGAGGGTCTTCACGAAGATTTGCAT 406 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396169935877506