Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F001297925.1_202015-09-23] 22,458 sequences; 57,457,034 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq22165 134 3e-26 seq14466 122 2e-22 >seq22165 Length=1746 Score = 134 bits (148), Expect = 3e-26 Identities = 333/499 (67%), Gaps = 20/499 (4%) Strand=Plus/Plus Query 48099 GTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGT 48158 |||||||| || ||||||| ||||| | ||| |||||||| | |||| ||||||| Sbjct 561 GTTTGTTGTTCAAGTGCTTG---TAGAGGAGGCAAGCAAAGTCAGTATGCATACCTTCGT 617 Query 48159 CCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCC 48218 | | |||||| | || |||||| |||||| ||||||| || | || || |||| Sbjct 618 CTCTTGAAATGAGCTCATTTGAGAAGGTGAGACCTGGCATGAGGCCACGCTTCTTAAGCC 677 Query 48219 AGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGA 48278 |||| |||| ||| || || ||||||||||||||||| | || ||||| || | | Sbjct 678 AGAAGATTGAGCAGAAGGATCCTGAGAAGAAGATGCCCTCGATGGCAGCGAAAGCAATTA 737 Query 48279 GCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCAGGAAAGCGCCCAGTCTGCCTTCT 48338 | ||||| |||| |||| || || ||||| || ||||| || ||||||| Sbjct 738 GTCTCTCAGCGAAGCTAGCGCTC---TCACCAATCCACTTAATGGCCCATTCAGCCTTCT 794 Query 48339 TCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAG---CTTCTTGCACTCACCTGCGT 48395 | | | ||| || | ||||| |||||| || ||| ||| || || Sbjct 795 TAGTTACAACTGGGATGTTAGTGATGGCTTTGAAGAGGAACTCCTT---CTCGTGTGGGT 851 Query 48396 CCGCAAC--AT-AGGTAGT-GAGCAGCTTTGCGTACATCTCAGAGTGCACATTCTCTATA 48451 | || || ||| || || || || ||| |||| ||||| | ||||| || Sbjct 852 C----ACTGATGAGGGTGTCGATGAGTACTGAGTAAGTCTCTGAGTGAATGTTCTCCATC 907 Query 48452 GCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCACTTCTGTGGAGAATCTC 48511 || ||||| || ||||| | || || || || | ||| || |||||||| Sbjct 908 ATCATTTGGAAGCCATAGAAACAGCGTGCTTCTGGAACTTGGATTTCAGTACAGAATCTC 967 Query 48512 TCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAAGAAGGCAAGGACATGTTTA 48571 | || ||||| ||||| || || ||||| ||||| ||||| |||||||| || || Sbjct 968 TGGGCGAGGTTCTCGTTGACGATTCCGTCTGAGGCAGCGAAGAAAGCAAGGACGTGCTTG 1027 Query 48572 AGGAAATGGCGCTCGTTGT 48590 | || || | |||||||| Sbjct 1028 ATAAAGTGTCTCTCGTTGT 1046 >seq14466 Length=3412 Score = 122 bits (134), Expect = 2e-22 Identities = 345/526 (66%), Gaps = 22/526 (4%) Strand=Plus/Minus Query 213111 TTCACGTTCCACATGTCAAACTGCAAGATGCCTTTGCTCACGGGGCTGCCCTGGTAAGAG 213170 ||| | ||||||||||| || | |||||||||| |||| || ||| || | || Sbjct 2361 TTCTCATTCCACATGTCGAATTAGAAGATGCCTTGACTCAATGGAGAGCCTGGGAATGAT 2302 Query 213171 GAGTAGGGGCCATGCTCCTTGGCCAGCTCGCAGGACGCCTGCAGGGCAGCGTAGTAGATG 213230 ||||| | || | ||||||| || ||| || |||| || ||||| |||||| Sbjct 2301 TAGTAGTGTCCTTCAACCTTGGCTAGATCGACTGAGCTTTGCATGGAAGCGTGGTAGATA 2242 Query 213231 GTTTCAAATATCTCCCTGTTGAGCTTCTTGGCCTCTGGGGACGT-GAAGGGCATCATCAT 213289 |||||||| || || ||||| | | || ||| | | | |||||| ||| | | Sbjct 2241 GTTTCAAAGATTTCTTGGTTGAATTGGTAAGC-TCTTTCGTCTTCGAAGGGGATCTTGAG 2183 Query 213290 GCGTTGGAACACATCAGCCAGCCCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAGGTT 213349 | | || |||||||||| || || | ||||| ||||| ||||||||||||| ||| Sbjct 2182 GAGCATGAGTGCATCAGCCAGACCTTGAATACCGATACCGATTGGTCTGTGTCTCATGTT 2123 Query 213350 AGACTTGGAGCACTCCTCCAAGGGGTAAAAGTTGCAGTCGATGATCTTGTTGAGGTTGCG 213409 || || | || || | || || ||||||| ||||||||| |||| | ||| Sbjct 2122 TGAGTTTTTGGCTTCATCGCATGGATAGAAGTTGCCGTCGATGATTCTGTTCAAGTTAAT 2063 Query 213410 GGTGGCCACTTTG----GTGACATGGGCCAGGTACTCGTGATTGAACACGTAGCCCCCGT 213465 |||| |||| || || | | || | ||| | | ||| ||| || | Sbjct 2062 GGTG----ATTTGATAAGTAACTTTGTGAAGTTTCTCATAGTCGAAGACG------CCAT 2013 Query 213466 CCTGCACAAACTCAGGCAGGGCGATGCTGGCCAGGTTGCAAACGGCCACCTCCT---GAG 213522 ||| ||| | ||| || | ||| || ||||||||||| || || || | | | Sbjct 2012 CCTTTACATATCTAGGTAGAGATATGGAAGCAAGGTTGCAAACAGCTACTTCATCTGGTG 1953 Query 213523 AGTCTGTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCT 213582 || |||||||| || ||||| ||||| ||| | | |||||| || ||||||| Sbjct 1952 AG---GTGTACTCGATAATCTCACAGCACAAATTGGAACTTTTGATGGTTCCGAGGTTCT 1896 Query 213583 GGTGGTTTGACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAGGG 213628 ||||| ||| |||||| |||||| || | |||||| || Sbjct 1895 TTTGGTTGCTCTTGCTGTTGGCGTGATCCTTATACAACATGTATGG 1850 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931271295454720