Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F001297925.1_202015-09-23] 22,458 sequences; 57,457,034 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq22165 96.9 6e-15 >seq22165 Length=1746 Score = 96.9 bits (106), Expect = 6e-15 Identities = 169/242 (70%), Gaps = 8/242 (3%) Strand=Plus/Minus Query 25834 TGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTT 25893 |||||||| |||||||| | ||||||||| || | ||| | || | || || Sbjct 783 TGGGCCATTAAGTGGATTG---GTGAGAGCGCTAGCTTCGCTGAGAGACTAATTGCTTTC 727 Query 25894 GCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCTCAAGCA 25952 ||||| | ||||||||||| ||| || || || ||| | ||||||||||| ||| | Sbjct 726 GCTGCCATCGAGGGCATCTTCTTCTCAGGATCCTTCTGCT-CAATCTTCTGGCTTAAGAA 668 Query 25953 GAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCT 26012 | || |||||| || || ||| || || |||||||| || ||||| ||| | Sbjct 667 GCGTGGCCTCATGCCAGGTCTCACCTTCTCAAATGAGCTCATTTCAAGAGACGAAGGTAT 608 Query 26013 CCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTCTCAAGA 26072 || | || ||||| ||||| ||||||| | |||||| | |||||| |||| | || Sbjct 607 GCATACTGACTTTGCTTGCCTCCTCTACAAG---CACTTGAACAACAAACTTTCTAACGA 551 Query 26073 GA 26074 || Sbjct 550 GA 549 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928584050043520