Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F001297925.1_202015-09-23] 22,458 sequences; 57,457,034 total letters Query= NC_019515.1 Length=93839 Score E Sequences producing significant alignments: (Bits) Value seq4291 91.5 9e-14 >seq4291 Length=4287 Score = 91.5 bits (100), Expect = 9e-14 Identities = 174/251 (69%), Gaps = 8/251 (3%) Strand=Plus/Minus Query 78365 ATGATTCTTGTAAATATGAGCGTCACCGATTGTGTGAATGAAGTCTCCTACTTCCAGTCC 78424 |||||| || || | |||||| ||||| | | |||||||| |||||| | || ||| Sbjct 1527 ATGATTTTTATATACATGAGCATCACCTAATACATGAATGAACTCTCCTCTCTTCAATCC 1468 Query 78425 GCACAAATGCGCAATAATATGTGTAAGTAATGCGTATGAAGCAATGTTAAATGGAATTCC 78484 ||||| || |||| || || | |||| || |||||||| || ||||| || Sbjct 1467 GCACACTTGTGCAAGCATGCAGGTTAACAATGAATAACTCGCAATGTTGAAAGGAATACC 1408 Query 78485 TAAGA---ATACGTCACCGCTTCGTTGGTACAATTGGCAACTTAGCTTTCCATCAACTGA 78541 |||| ||| |||| || ||| |||| |||||| |||||||||||| | || Sbjct 1407 -AAGACCCATA--TCACAAGATCTTTGATACATTTGGCAGGAAAGCTTTCCATCAGCAGA 1351 Query 78542 TACGTAAAACTGGAATAGAGTGTGACAAGGCGGTAGTGCCATATCATCTAAG-TCAGCAG 78600 || ||||| | || | |||| || || || || ||||| | | |||| ||||||| Sbjct 1350 AACATAAAATTAAGCTAAAATGTGGCAGGGAGGAAGAGCCATGT-TTTTAAGATCAGCAG 1292 Query 78601 GATTCCAAGCA 78611 ||||||||| Sbjct 1291 CGTTCCAAGCA 1281 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 300077844144400