Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F001297925.1_202015-09-23] 22,458 sequences; 57,457,034 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq1053 206 1e-48 seq14466 161 5e-35 >seq1053 Length=3228 Score = 206 bits (228), Expect = 1e-48 Identities = 258/346 (75%), Gaps = 6/346 (2%) Strand=Plus/Minus Query 25888 ATTTGGACAGAATAAATGCCAATCAGCATTTTGCTCAACT-TTCTCCATAAATAAATCTG 25946 ||||||||| | | | |||||| ||||| |||||| ||||| || || | ||||| Sbjct 1463 ATTTGGACACATCAGAGTCCAATCTTCATTTGCTTCAACTCTTCTC-ATGAAAAGATCTG 1405 Query 25947 GAATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTTTCCGTGATTCTTTT 26006 || |||| | || || || | ||||| ||||| | ||||| || |||||||||||| Sbjct 1404 GAGTCCAAAGAGCGTAGAAAAGGTCTCTAGCTCTATTCTCTTCCTTACCGTGATTCTTTC 1345 Query 26007 TTAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGCAAAACTAC 26066 | || | | ||| || | ||||| | |||||||||||| | ||||| ||| ||| | Sbjct 1344 TAAGTTAAAGGAAGTCGTAGATATCAGCGTGCCATGGTTCAACATAGACAGCGAAAGCTC 1285 Query 26067 CTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCAACA 26126 | ||||||||||| ||||||| ||| ||||||||||| || |||||||| || ||||||| Sbjct 1284 CCTTTCTTTTTCCACCACCTTAATCGACGTATCTTGCGGTGTCATTGAAGACCTTCAACA 1225 Query 26127 TTGGAACTAATCCAGTTGAAAATCCGTTTGT-GCTATGAATCTTGGATCCTGTCGATCTA 26185 |||||| |||||| ||||| |||||||||| || || || | ||| | | | |||| Sbjct 1224 TTGGAATCAATCCATTTGAATATCCGTTTGTACCTCTG-ATGTAGGAGTCAGCAGCTCTA 1166 Query 26186 ATATCGTGAGCATGA-ATACCGATTCCACCAGCCCATTTTGAAATA 26230 | |||| || ||| | ||||| |||||||| ||||| ||| Sbjct 1165 ACATCG-GACACTGACACTCCGATACCACCAGCAGCCTTTGAGATA 1121 >seq14466 Length=3412 Score = 161 bits (178), Expect = 5e-35 Identities = 161/209 (77%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 25925 ACTTTCTCCATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCTCATT 25984 ||| ||| ||| ||||| ||||||||||| | || | || || ||||| ||||| | Sbjct 1668 ACTCTCTTCATGAATAAGTCTGGAATCCAGAGAGCGAAGAACAAGTCTCTTGCTCTTTGT 1609 Query 25985 TCTTCTTTTCCGTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGT 26044 || ||||| |||||||||||| |||| | | |||||| || | ||||| |||||||||| Sbjct 1608 TCCTCTTTACCGTGATTCTTTCTTAGTTGAAGGAAATCGAAGACATCTGCGTGCCATGGT 1549 Query 26045 TCTAAATAGATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCA 26104 || || || ||||| || ||| ||||| || || || ||||| || || ||||| ||| Sbjct 1548 TCCAAGTATATAGCGAATGAACCCTTTCTCTTGCCACCTCCTTGGTCGACATATCTAGCA 1489 Query 26105 GTTTCATTGAAAACTTTCAACATTGGAAC 26133 || |||||||||||| | | |||||| || Sbjct 1488 GTCTCATTGAAAACTCTGAGCATTGGCAC 1460 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 252970741212350