Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F001297925.1_202015-09-23] 22,458 sequences; 57,457,034 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq3546 107 2e-18 >seq3546 Length=3566 Score = 107 bits (118), Expect = 2e-18 Identities = 189/273 (69%), Gaps = 8/273 (3%) Strand=Plus/Minus Query 139287 TAGAATCCAGACATATTTGCGAGCAGTGCTTGTGCTGTGCAGATGTTACTGGTTGCTTTG 139346 ||||| |||| || || || || || ||||| || ||||| ||||| |||||| ||| Sbjct 1518 TAGAAAGCAGAAATGTTAGCAAGAAGGGCTTGAGCAGTGCAAATGTTTGAGGTTGCCTTG 1459 Query 139347 TCTCTTCTAATATGCTGCTCTCTAGTTTGTAGTGCTAATCTGTATGCAGGATTGCCTTCG 139406 |||||||| |||||||| ||||| ||||| || || | |||||| || | |||| | Sbjct 1458 TCTCTTCTGATATGCTGTTCTCTGGTTTGGAGAGCCATTCTGTAAGCTTTGTCACCTTGG 1399 Query 139407 CTGTCCACTGACTGACCTACAATTCTGCCAGGTATCTTTCTCTTATACTTGTCTGTTGTT 139466 || | ||| ||| | || | || || |||||||||||| | | ||| || Sbjct 1398 GCATCAATTGAGACACCGATAAGACGACCTGGCATCTTTCTCTTAAATTCATCT----TT 1343 Query 139467 GCAA---AGA-ATGCAGCATGAGGACCTCCGTATCCCATAGGAATACCAAACCTTTGCAT 139522 |||| | | | | | ||| ||||| || || ||||||| | |||||| |||| | Sbjct 1342 GCAAGCCATATAACCTGGATGGGGACCACCATAGGCCATAGGTACACCAAATCTTTATAC 1283 Query 139523 ACTACCTACAGCAATATCAAATCCCCACTCACC 139555 | || | |||||||||| |||| ||||| Sbjct 1282 AGATCCAATTGCAATATCAACTCCCATTTCACC 1250 Score = 104 bits (114), Expect = 3e-17 Identities = 163/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 139845 TTATATGCTAACAGCATTGCCTCTGCTGCTGCAGTTGCTTCATCTAATAGAGATGCGTTT 139904 |||||||| | | ||| | ||| || |||| ||| || ||||| || ||||| || || Sbjct 960 TTATATGCCATAAACATAGTCTCAGCAGCTGAAGTAGCCTCATCCAAGAGAGAAGCATTA 901 Query 139905 GCTATTGGTAATCCTGTAAGTTCTGTGATGAGCGTTTGGTAATTGAATAAAGCTTCCAAT 139964 | | | | || | || || | | |||||| | || |||| | ||| | | Sbjct 900 GAGACGTCGAGTTTGGTTAACTCAGTCACCATAGTTTGGAAGTTTAATAGGGATTCTAGT 841 Query 139965 CTTCCCTGAGATATCTCAGCTTGATAGGGAGTGTAAGATGTGTACCAACTAGGATTCTCA 140024 || || |||| ||||||||||||||||| ||||||| ||||||||| | ||||| ||| Sbjct 840 CTACCTTGAGCGATCTCAGCTTGATAGGGGGTGTAAGGTGTGTACCAGTTTGGATTTTCA 781 Query 140025 AGAACGTTTC-GCTG-TATGACTGGGGGTGTAATGGTTCCATAGTATCCT 140072 ||||| || | ||| || ||||||||||| | ||| |||||| ||| Sbjct 780 AGAACATTCCTTCTGATAACACTGGGGGTGT--TAGTTGGATAGTAACCT 733 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578835860674160