Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F001297925.1_202015-09-23] 22,458 sequences; 57,457,034 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq14466 194 2e-44 seq1053 118 1e-21 seq22165 100 3e-16 >seq14466 Length=3412 Score = 194 bits (214), Expect = 2e-44 Identities = 671/1042 (64%), Gaps = 21/1042 (2%) Strand=Plus/Plus Query 75212 CCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGTC 75271 |||||| ||||||| ||| | || | | || |||||| | | || || ||||| | | Sbjct 1142 CCACAGCACATGTTGATGAGAGTGTCTGTAGGTATCCACAAGAAGGATATCGATTCAGCC 1201 Query 75272 TTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTTC 75331 | || || ||| || ||| | | ||| | ||| || || || || | ||| Sbjct 1202 ATTGAAACTTACAACCTCATGAGTGACAGATGGTTTACTCATGCTACTCCTACTTTGTTC 1261 Query 75332 AATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGAC 75391 |||||||| || || | || | ||||||||||||||||| | | ||||| ||| Sbjct 1262 AATGCTGGAACTCCCAAGCCATAAATGTCCAGTTGCTTCCTCCTTATGATGAAGGACGAC 1321 Query 75392 TCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGG 75451 ||||||||||||||||||| || || | | | || | || ||||| | ||||| Sbjct 1322 TCAATCAACGGTATCTATGATACCCTCAAGAACATCGCACTGATTTCAAAATCAGCTGGT 1381 Query 75452 GGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAAT 75511 ||| | || || | || | | ||||| | | | || ||| || ||| Sbjct 1382 GGTGTGGGTCTGGCTGTTCACAACATCAGAGCTACTGGCAGTTACATCAAGGGCACCAAT 1441 Query 75512 GGTCAATCAG--ATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATG 75569 ||||| ||| |||| | | |||||||| | || || || | || || | |||| Sbjct 1442 GGTCA--CAGTAATGGCCTCGTGCCAATGCTCAGAGTTTTCAATGAGACTGCTAGATATG 1499 Query 75570 TAAATCAAGCGGGGCGTC----GCAAGGGGTCCATCGCGGTCTACTTGGAACCATGGCAT 75625 | | |||| | || | | | ||||| || |||| | ||||||||||||||||| Sbjct 1500 TCGACCAAG-GAGGTGGCAAGAGAAAGGGTTCATTCGCTATATACTTGGAACCATGGCAC 1558 Query 75626 GCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCGGTGT 75685 || ||| || | || |||||| | || || || || ||| | || || | Sbjct 1559 GCAGATGTCTTCGATTTCCTTCAACTAAGAAAGAATCACGGTAAAGAGGAACAAAGAGCA 1618 Query 75686 AGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAGGGT 75745 ||||| | || | | || |||||||||||| | ||||||||| | || | | | Sbjct 1619 AGAGACTTGTTCTTCGCTCTCTGGATTCCAGACTTATTCATGAAGAGAGTCCAAGCTGAC 1678 Query 75746 GGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACGCGGTGGGTGAG 75805 || | ||| | |||||||| || || | || || |||| ||||| ||| | Sbjct 1679 GGAGACTGGACACTTTTCTGCCCCAACGAAGCCAAGGGCCTCTTCGACGTTCATGGTTAA 1738 Query 75806 GAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGCCAATGCGACTGTACCA 75865 || || ||||| || ||||| |||||||| | | || | | | ||| | | Sbjct 1739 GAATTCGAAGCACTGTACACTAAGTATGAGCAATAAGGAATTGGTAGAAAGACAATGAAA 1798 Query 75866 GCCGCCGATGTTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCATATATG 75925 || | ||||| | || ||| | ||||||| | || |||||||| ||||| ||| Sbjct 1799 GCTCAAAAACTTTGGGAAGCCATTATTGAATCACAAATCGAAACTGGAACTCCATACATG 1858 Query 75926 CTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGAGC 75985 | || |||||| |||| ||||| ||||||||||| | ||||| ||||| || Sbjct 1859 TTGTATAAGGATCACGCCAACAGCAAGAGCAACCAAAAGAACCTCGGAACCATCAAAAGT 1918 Query 75986 TCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGTTTGCAAT 76045 || ||| | ||| || ||| | |||||||| ||||| ||||||||||| Sbjct 1919 TCCAATTTGTGCTGTGAGATTATCGAGTACACCTCACCAGATGAAGTAGCTGTTTGCAAC 1978 Query 76046 TTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAGACTCGCACTTTTGATTATGAA 76105 | || || || | || || | ||||| || || | || || || ||||| Sbjct 1979 CTTGCTTCCATATCTCTACCTAGATATGTAAAGGA------TGGCGTCTTCGACTATGAG 2032 Query 76106 AAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGAGTCATTGACAGAAAT 76165 |||||||| || | || | | |||| || | ||| || |||| ||| | || Sbjct 2033 AAACTTCACAAAGTTACTTATCAAATCACCATTAACTTGAACAGAATCATCGACGGCAAC 2092 Query 76166 TTTTATCC---CGTTGAGACTGCGCGAAAGTCTAATATGCGACACAGACCTATTGGTTTG 76222 || ||||| || ||| || ||| || || ||| |||||||||| || ||| | Sbjct 2093 TTCTATCCATGCGATGA---AGCCAAAAACTCAAACATGAGACACAGACCAATCGGTATC 2149 Query 76223 GGTGTTCAAGGTCTCGCGGATG 76244 ||| |||||||||| || |||| Sbjct 2150 GGTATTCAAGGTCTGGCTGATG 2171 >seq1053 Length=3228 Score = 118 bits (130), Expect = 1e-21 Identities = 501/772 (65%), Gaps = 37/772 (5%) Strand=Plus/Plus Query 75254 GAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCAC 75313 |||||| |||| || | || ||||| ||||| |||| ||| ||| | ||| Sbjct 942 GAAGACCTTGAGTCAGCGTTCGAGACTTACGATTTGATGAGTCAACTGTGGTTTACTCAT 1001 Query 75314 GCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTT 75373 || || || || || || || |||| ||||||| ||| ||||| |||| ||| ||| Sbjct 1002 GCCACTCCTACTCTGTTTAACTCTGGAACACCAAAACCATAGATG---AGTT-CTTGCTT 1057 Query 75374 ATCGCCAAC----AAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGC 75429 | || ||| || || ||||| || | ||||||| || |||| | | | ||| Sbjct 1058 CTTGCTAACTGTAAAAGAAGACTCCATTGATGGTATCTTTGAAACTTTAAAATAAATTGC 1117 Query 75430 GCAAATCTCAAAGTGGGCTGGGGGTATTGGGATG-CACA-TCCATGATGTGAGAGCCAAT 75487 ||||||||| ||||| ||||| || || || ||| ||||| ||||| | Sbjct 1118 TATTATCTCAAAGGCTGCTGGTGGTATCGGAGTGTCAGTGTCC--GATGTTAGAGCTGCT 1175 Query 75488 AAATCTCGTATTCGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTA 75547 | || || | || ||||| || | ||| |||| | ||||||||| | || Sbjct 1176 GACTCCTACATCAGAGGTACAAACGGATATTCAAATGGATTGATTCCAATGTTGAAGGTC 1235 Query 75548 TTTAACGCCACAGCGCGCTATGTAAATCAAGCGGGGCGTC---GCAAGGGGTCCATCGCG 75604 || || | ||| || | || || || ||| || | | ||||| | |||| Sbjct 1236 TTCAATGACACCGCAAGATACGTCGATTAAGGTGGTGGAAAAAGAAAGGGAGCTTTCGCT 1295 Query 75605 GTCTACTTGGAACCATGGCATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAA 75664 ||||| | ||||||||||| || |||||| || |||||| | | || || || Sbjct 1296 GTCTATGTTGAACCATGGCACGCTGATATCTACGACTTCCTTTAACTTAGAAAGAATCAC 1355 Query 75665 GGTGACGAAGAGGCTCGGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTC 75724 ||| | |||||| | | |||||| || || | | || |||| |||||| |||||| Sbjct 1356 GGTAAGGAAGAGAATAGAGCTAGAGACCTTTTCTACGCTCTTTGGACTCCAGATCTTTTC 1415 Query 75725 ATGAAGCGGGTTGAGGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGA-CAAGGCACCAGG 75783 |||| | ||||| | || | ||| |||| | |||||| | || || ||||| Sbjct 1416 ATGAGAAGAGTTGAAGCAAATGAAGATTGGACTCTGATGTGTCCAAATGAATGC-CCAGG 1474 Query 75784 TCT--CTCCGACGCGGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGA- 75840 || || | || | ||||||||||||||| || |||| |||||| ||| | Sbjct 1475 ACTTACTACTACATG--GGGTGAGGAGTTTGAGAAACTTTACATCGAGTATG-AGACCAC 1531 Query 75841 GGGTAGAG---CCAATGCGACTGTACCAGCCGCCGATG--TTTGGAAGGCT--ATTCTCA 75893 ||||||| ||| ||||| || |||| | ||| || | || | Sbjct 1532 TGGTAGAGGTCGCAA---AACTGTTAAGGC--TAGATGGCTCTGG--GGTTAAATCATAG 1584 Query 75894 AATCACAGACGGAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGA 75953 | || || | |||||||| || || |||||||| ||||| |||||||| || | || Sbjct 1585 AGTCTCAAAACGAGACTGGTACTCCTTATATGCTCTACAAAGATGCTTGCAATAGAAAAT 1644 Query 75954 GTAACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAAT 76005 |||| | | ||| | || ||||| ||||| || || |||||||| || || Sbjct 1645 CTAACTAGTAAAATCTTGGCACAATTAAGAGTTCTAACCTTTGCACTGAGAT 1696 >seq22165 Length=1746 Score = 100 bits (110), Expect = 3e-16 Identities = 138/190 (73%), Gaps = 5/190 (3%) Strand=Plus/Minus Query 65023 AAGAAGGCGAAATGGGCAATGAAATGGTTTGACACAAAGTCTCGCTC-CTTCGCCGAGCG 65081 |||||||| ||||||| || || ||| ||| | || |||| |||||| ||| | Sbjct 795 AAGAAGGCTGAATGGGCCATTAAGTGGATTGGTG-AGAG---CGCTAGCTTCGCTGAGAG 740 Query 65082 CCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTATTTA 65141 || |||| || || | ||||| ||||||||||| || || |||||| | || | Sbjct 739 ACTAATTGCTTTCGCTGCCATCGAGGGCATCTTCTTCTCAGGATCCTTCTGCTCAATCTT 680 Query 65142 TTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCCCG 65201 ||| | |||||||| || ||||||||||| || |||||||||||| || ||||| | Sbjct 679 CTGGCTTAAGAAGCGTGGCCTCATGCCAGGTCTCACCTTCTCAAATGAGCTCATTTCAAG 620 Query 65202 AGATGAGGGT 65211 ||| || ||| Sbjct 619 AGACGAAGGT 610 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596402127999040