Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F001297925.1_202015-09-23] 22,458 sequences; 57,457,034 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq533 123 5e-23 seq14202 91.5 3e-13 >seq533 Length=4588 Score = 123 bits (136), Expect = 5e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 |||||||||||||| || || || || | ||| | ||||| || || ||||| || Sbjct 4216 ACCACCTCTAAGTCTCAAGACCAAGTGGAGAGTTGATTCTTTTTGGATGTTGTAATCAGA 4275 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 || | || |||| ||||| | || |||||||| || | ||||||||| ||||| || Sbjct 4276 CAAGGTTCTGCCGTCTTCCAACTACTTTCCAGCAAAGATGAGTCTCTGTTGATCAGGGGG 4335 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTAC 172021 || |||||||| ||||| || || || || || || ||||| || | ||||| Sbjct 4336 AATACCTTCTTTGTCTTGAATCTTGGCCTTAACGTTTTCGATGGTATCAGAAGGCTCTAC 4395 Query 172022 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 || |||||||| || ||||| || || || || | ||| |||| |||||| Sbjct 4396 ATCAAGAGTAATAGTCTTACCGGTCAAAGTCTTGACGAAGATCTACATTTT 4446 >seq14202 Length=1113 Score = 91.5 bits (100), Expect = 3e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 |||||||||||||| | || || || | ||||| ||| || || || || || Sbjct 881 ACCACCTCTAAGTCTGAGGACCAAGTGGAGAGTAGACTCCTTTTGGATGTTGTAGTCGCT 822 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 |||| || |||| || | ||||||||| || || || | ||| ||||| || ||||| Sbjct 821 CAAAGTTCTGCCGTCTTCAAGTTGTTTACCGGCGAAGATGAGTCTTTGTTGATCGGGTGG 762 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTAC 172021 || ||||| || || || || || ||| ||||| || || || || | ||| || Sbjct 761 AATACCTTCCTTGTCCTGGATCTTGGCTTTGACATTCTCGATGGTGTCGGATGGTTCGAC 702 Query 172022 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || | ||| || || ||||| || || || || | ||| |||| ||| Sbjct 701 GTCCAAAGTGATAGTCTTACCGGTCAAGGTCTTCACGAAGATCTACAT 654 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||| ||||| | || | || || || | |||| ||||| |||||| || ||| Sbjct 655 ATACCTCCTCTCAATCTAAGAACCAAGTGAAGGGTAGATTCTTTTTGAATATTGTAGTCT 596 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | | || | | || || | ||| || || || || || | ||| ||||| || ||| Sbjct 595 GAAAGGGTTCTTCCATCTTCAAGTTGCTTGCCGGCGAAGATAAGTCTTTGTTGATCGGGT 536 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || |||||||||||||| || || || || || || || ||||| | || Sbjct 535 GGGATACCTTCTTTATCTTGGATCTTTGCCTTAACGTTTTCAATGGTGTCTGATGGCTCG 476 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || || || ||||| || || || | || |||| ||| || ||||| Sbjct 475 ACGTCAAGGGTGATGGTCTTTCCGGTAAGGGTCTTAACGAAGATTTGCAT 426 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 904881905696400