Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F001297925.1_202015-09-23] 22,458 sequences; 57,457,034 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq1053 141 3e-28 seq18988 107 6e-18 seq17419 98.7 3e-15 >seq1053 Length=3228 Score = 141 bits (156), Expect = 3e-28 Identities = 580/898 (65%), Gaps = 26/898 (3%) Strand=Plus/Minus Query 155489 ATCAATAATGTTATTTAAATTTGTAACCAATACCTTGGTTACGTCTGCTAATTTCACATA 155548 ||| ||||| ||||||| ||| || | | |||||| |||| ||| ||| |||| Sbjct 1850 ATCTATAATTTTATTTAGATTCTTAGTAATTCTCTTGGTCACGTAATGTAACTTCTCATA 1791 Query 155549 GTCAAATGTTT---TATCCTCATTTACA--AACATACCAAGACCAATAGACGCCAGATTA 155603 ||| || || | |||| || ||| || || | | ||||||| || || ||| Sbjct 1790 ATCATATTCTTAGGTTTCCT--TTAACACGAATCTATTTAAAGCAATAGAAGCTAGGTTA 1733 Query 155604 CATACCGCAGTCTCCTTGTCGTCGCTGT---ATTCTACAATCTCACAGCACAGGTTAGAA 155660 || || || | | | ||| ||| |||| || |||||| ||| ||||||||| Sbjct 1732 CAGACAGC---CACTTCATCGGGACTGGTAAATTCGACGATCTCAGTGCAAAGGTTAGAA 1676 Query 155661 CTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAAGCATCCTTGTATAGA 155720 ||||| || ||||| | ||| | || ||||||||| || || |||||||| ||||| || Sbjct 1675 CTCTTAATTGTGCCAAGATTTTACTAGTTAGATTTTCTATTGCAAGCATCTTTGTAGAGC 1616 Query 155721 ATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATCTTTAGCCAGAGGTCACGGGCA 155780 || || || || || ||||| | || | || | || | |||||| | || Sbjct 1615 ATATAAGGAGTACCAGTCTCGTTTTGAGACTCTATGATTTAACCCCAGAGCCATCTAGCC 1556 Query 155781 TTAATTTGCTTGTTGTATCTGCCTTCCGACTCATATTTCATATACAGCGTTCGGTAA-TC 155839 |||| ||| ||| || | |||||| | || || || ||| || || Sbjct 1555 TTAACAGTTTTGCGACCTCTACCAGTGGTCTCATACTCGATGTAAAG-TTTCTCAAACTC 1497 Query 155840 CTCACCGTAACAATCACTCAGTCCAGGGCACTTATCGGGGCAAAACAGCGACCAAATTTT 155899 |||||| | | | | ||||| ||||| | || || || | ||| | |||| || Sbjct 1496 CTCACCCCATGTAGTAGTAAGTCCTGGGCATTCATTTGGACACATCAGAGTCCAATCTTC 1437 Query 155900 ATTACCGATTACACGCT--CCATAAATACATCACTCGCCCAAATAGCATAGAAAAGGTCC 155957 ||| | || || || ||| || | ||| | ||||| ||| ||||||||||| Sbjct 1436 ATT--TGCTTCAACTCTTCTCATGAAAAGATCTGGAGTCCAAAGAGCGTAGAAAAGGTCT 1379 Query 155958 CTTGCCTTTGACTCCTCATCGCCGTGATTCTTCCGTAGCTCTAAGAATTCCTCAATATCA 156017 || || | ||| || | ||||||||||| | || | | ||| || | |||||| Sbjct 1378 CTAGCTCTATTCTCTTCCTTACCGTGATTCTTTCTAAGTTAAAGGAAGTCGTAGATATCA 1319 Query 156018 GGATGGTGTGGCTCCAGATACATAGC-AAAACTACCATTCCTCTT--GCCACCCTGATCT 156074 | || ||| || | ||| | ||| ||| || || ||| | || ||||| | ||| Sbjct 1318 GCGTGCCATGGTTCAACATAGACAGCGAAAGCTCCCTTTCTTTTTCCACCACCTTAATCG 1259 Query 156075 ACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATACCATTGGAAGTGCCA 156134 || || | || || | ||||||||| | ||| ||||| | ||||| ||| || Sbjct 1258 ACGTATCTTGCGGTGTCATTGAAGACCTTCAACATTGGAATCAATCCATTTGAATATCCG 1199 Query 156135 TTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTATGAATATG-TAGTCCAATACC 156193 || || || | || | || ||| | | |||| | || || | ||| ||||| Sbjct 1198 TTTGTACCTCTGATGTAGGAGTCAGCAGCTCTAACA-TCGGACACTGACACTCCGATACC 1140 Query 156194 ACCTG-ACCATTTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAAATACCTTCAATAG 156252 ||| | | | ||| || || ||| || |||| ||| | || ||||| ||||| | Sbjct 1139 ACCAGCAGCCTTT-GAGATAATAGCAATTTATTTTAAAGTTTCAAAGATACCATCAATGG 1081 Query 156253 AATCATCTTCCATTGATAGTAGATAGCACGAACTTAATTGAGGTCGTGGTGTTCCAGCGT 156312 | || |||| | | ||| | |||| ||||| | | ||| ||||||||||| || Sbjct 1080 AGTCTTCTTTTACAGTTAGCAAGAAGCAAGAACTCATCTATGGTTTTGGTGTTCCAGAGT 1021 Query 156313 TGAATAGTGTAGGTGTTGCATGAATAAAATACTTATTAGACATATAATCGTATGTCTC 156370 | || || ||||| || |||||| |||| || | | ||| ||||||| ||||| Sbjct 1020 TAAACAGAGTAGGAGTGGCATGAGTAAACCACAGTTGACTCATCAAATCGTAAGTCTC 963 >seq18988 Length=5971 Score = 107 bits (118), Expect = 6e-18 Identities = 129/172 (75%), Gaps = 4/172 (2%) Strand=Plus/Minus Query 302510 AGGAATACTGAATGATTTTGTTCTTGTTAT-TTCTTACGGTCATATCATAACCAATCATA 302568 |||||| ||||| || | |||||| | | ||||||| || |||||| | ||| Sbjct 2980 AGGAAT--TGAATAATCT-GTTCTTTTGAAGTTCTTACAGTTCCATCATACTTCACCATG 2924 Query 302569 ATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACA 302628 | |||||||| | ||| || ||||| | ||||| ||||||||| | ||||| || Sbjct 2923 ACGTCTTCCAGAGCCTTAATCAAACGTCTTTGAATGTAACCAGTTTCTGCAGTTTTGACT 2864 Query 302629 GCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTT 302680 ||||||||||| ||||| ||||||| ||||||||||||||||| | |||| Sbjct 2863 GCTGTATCAATGAGACCTTCACGACCTCCCATAGCATGGAAGAAGAATTCTT 2812 Score = 84.2 bits (92), Expect = 6e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 301864 ACACCAGCAAAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGT 301923 ||||||||||| ||||||||||||| || | ||||| | |||||| |||||||| || Sbjct 3688 ACACCAGCAAAATGGAAAGTATTCAAGGTCATCTGAGTGGCTGGCTCTCCAATACTCTGA 3629 Query 301924 GCCGCAATCATACCAACCATTTCTCCTGG 301952 || |||| | ||||||||||| ||||| Sbjct 3628 GCTCCAATACTTCCAACCATTTCACCTGG 3600 >seq17419 Length=6458 Score = 98.7 bits (108), Expect = 3e-15 Identities = 184/269 (68%), Gaps = 1/269 (0%) Strand=Plus/Minus Query 289021 CtttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTC 289080 || || || || || ||||| |||||||||||||| || | || | ||| ||| Sbjct 5118 CTCTTCTTTCCGACTGCATCTATTTCGTCAATGAAGATAATTGCAGGGGCCTTTGATCTG 5059 Query 289081 GCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAAT 289140 || | || || |||||||| | || || |||| ||| || |||||||||| || Sbjct 5058 GCTTTCTTGAACAAGTCTCTTACTCTTGAGGCGCCAACACCTACGAACATTTCTACGAAG 4999 Query 289141 TCAGAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGA 289200 || ||| |||| | | || ||| | || |||||||| || ||||||||| | || || Sbjct 4998 TCGGAACCGGAAATTGAAAAGAAGGGGACTTTTGCTTCACCAGCTACTGCCTTGGCGAGC 4939 Query 289201 AGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCA 289260 | |||||||| || || ||||| |||| || | || | || ||| |||| ||| Sbjct 4938 ATCGTCTTACCGCAACCTGGGGGTCCTACTAAAAGCGCACCTCTGGGGACTCTTGCTCCA 4879 Query 289261 GCAGACTTATATTTCTCAGGGCTCTTTAA 289289 || ||| |||| ||| ||||||| Sbjct 4878 AGTTTCTGATACTTCT-TGGGATCTTTAA 4851 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471394094604346