Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F001297925.1_202015-09-23] 22,458 sequences; 57,457,034 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq22165 89.7 6e-12 >seq22165 Length=1746 Score = 89.7 bits (98), Expect = 6e-12 Identities = 173/254 (68%), Gaps = 6/254 (2%) Strand=Plus/Plus Query 869210 AAGGCGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGCCC 869269 |||| ||| || ||||||||||| |||||||| ||||| ||||| | |||||| || Sbjct 641 AAGGTGAGACCTGGCATGAGGCCACGCTTCTTAAGCCAGAAGATTGAGCAGAAGGATCCT 700 Query 869270 GAGAAAAAGATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGG 869329 ||||| ||||||||||||| ||| || || | || || | ||| || ||| | | Sbjct 701 GAGAAGAAGATGCCCTCGATGGCAGCGAAAGCAATTAGTCTCTCAGCGAAGCT-----AG 755 Query 869330 CCCTCCTTGTTGATCCACTTCATCGCCCAGTCGGCCTTTTTCCTCACCGACGGCACCGTG 869389 | || || |||||||| || ||||| || ||||| || | || || | | Sbjct 756 CGCT-CTCACCAATCCACTTAATGGCCCATTCAGCCTTCTTAGTTACAACTGGGATGTTA 814 Query 869390 TCGATGGCGCGAAAGAGGTGGTCCTTTTCGGCCGGGTCCTTGACATAGGTGTCGATCAGG 869449 |||||| |||||| ||||| ||| ||||| ||| ||||||||| || Sbjct 815 GTGATGGCTTTGAAGAGGAACTCCTTCTCGTGTGGGTCACTGATGAGGGTGTCGATGAGT 874 Query 869450 AGCGAATAGGTCTC 869463 | || || ||||| Sbjct 875 ACTGAGTAAGTCTC 888 Score = 87.8 bits (96), Expect = 2e-11 Identities = 199/297 (67%), Gaps = 2/297 (1%) Strand=Plus/Plus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 ||||| |||||||| || || |||||||| || || | | |||| |||||| Sbjct 890 GAGTGAATGTTCTCCATCATCATTTGGAAGCCATAGAAACAGCGTGCTTCTGGAACTTGG 949 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 | || | ||| | ||| ||||||||| ||||| ||||| ||| ||||| Sbjct 950 ATTTCAGTACAGAATCTCTGGGCGAGGTTCTCGTTGACGATTCCGTCTGAGGCAGCGAAG 1009 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACG 869812 ||||| |||||||||||||||||||| | ||||| ||| |||| | |||| | Sbjct 1010 AAAGCAAGGACGTGCTTGATAAAGTGTCTCTCGTTGTCATTGAGTCTCTCCCAATCTTTA 1069 Query 869813 GTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCG-AGGCCTCGGCCTTTTTGTA 869871 || | | |||||| | ||||| | |||||||| | || | || | | ||||| Sbjct 1070 ACATCAGTGGCGAGGTCGATTTCCTCAGAGGTCCAGAAAGCAGCCATCTG-GTCCTTGTA 1128 Query 869872 CATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTTGTC 869928 ||||| ||| | | | ||| ||| || | || ||||| | ||| ||||| || Sbjct 1129 CATCTTCCAGATGTCGTTGTACTTGATTGGAAGGATAACAAATCTGTTTGGGTTATC 1185 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6105296191349186