Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F001297925.1_202015-09-23] 22,458 sequences; 57,457,034 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq3401 93.3 7e-13 seq4298 91.5 2e-12 >seq3401 Length=2672 Score = 93.3 bits (102), Expect = 7e-13 Identities = 165/241 (68%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||||||||||||||| ||||||||||||||| |||| ||||| || | | Sbjct 593 TGTACTTGGTGACGGCCTTGGTACCTTCTGAGACGGCGTGCTTGGCGAGTTCACCTGGGA 534 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || || | |||||||| |||| ||| | || | |||| |||||| | Sbjct 533 GGAGGAGTCTGACGGCGGTTTGGACCTCTCTGGATGAAAGAGTGTGCTTCTTGTTGTATC 474 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | || ||||||| | |||| |||| || || | || ||||||| Sbjct 473 TAACGAGCTTTGAGGCCTCGAGGGCGATCTTCTCGAAGATATCACCAATGAAGGAGTTCA 414 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| ||| | |||||||| || || ||||| || |||||||| || ||| Sbjct 413 TGATGTGCATGGATCTCTTGGAGATACCGGTCTCTGGGTGGACTTGCTTGAGGACTCTGT 354 Query 1485710 A 1485710 | Sbjct 353 A 353 >seq4298 Length=3651 Score = 91.5 bits (100), Expect = 2e-12 Identities = 73/88 (83%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||||||||||||||| ||||||||||||||| |||| ||||| || | | Sbjct 3378 TGTACTTGGTGACGGCCTTGGTACCTTCTGAGACGGCGTGCTTGGCGAGTTCACCTGGGA 3319 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTC 1485557 || || | |||||||| |||| ||| Sbjct 3318 GGAGGAGTCTGACGGCGGTTTGGACCTC 3291 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7913857440109062