Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F001297925.1_202015-09-23] 22,458 sequences; 57,457,034 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq14202 118 2e-21 seq533 116 6e-21 seq18203 109 9e-19 seq2220 100 4e-16 >seq14202 Length=1113 Score = 118 bits (130), Expect = 2e-21 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAAC-ATAAC 146090 ||||||| ||| | || || | || ||||| || || || |||| || || | || | Sbjct 427 TGCAAATCTTCGTTAAGACCCTTACCGGAAAGACCATCACCCTTGACGTCGAGCCATCA- 485 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 || || ||| |||| || || || || ||| ||||||||| || |||||||||||| Sbjct 486 GACACCATTGAAAACGTTAAGGCAAAGATCCAAGATAAAGAAGGTATCCCACCCGATCAA 545 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 |||||||| || || || || || ||| | || ||| ||||| | |||| || ||| Sbjct 546 CAAAGACTTATCTTCGCCGGCAAGCAACTTGAAGATGGAAGAACCCTTTCAGACTACAAT 605 Query 146211 ATACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 || ||||||||||| || | || || || | |||| |||||||||| Sbjct 606 ATTCAAAAAGAATCTACCCTTCACTTGGTTCTTAGATTGAGAGGAGGTA 654 Score = 102 bits (112), Expect = 1e-16 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 146037 ATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACGATACT 146096 || ||| | || || || || || || || || ||| | || || |||| ||| || Sbjct 660 ATCTTCGTGAAGACCTTGACCGGTAAGACTATCACTTTGGACGTCGAACCATCCGACACC 719 Query 146097 ATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAACAAAGA 146156 || | ||||| ||| || || || || ||||| ||||||||||||||||||||| Sbjct 720 ATCGAGAATGTCAAAGCCAAGATCCAGGACAAGGAAGGTATTCCACCCGATCAACAAAGA 779 Query 146157 CTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATATACAA 146216 ||||| || || ||||||||| | || || ||||| || | || || || || ||| Sbjct 780 CTCATCTTCGCCGGTAAACAACTTGAAGACGGCAGAACTTTGAGCGACTACAACATCCAA 839 Query 146217 AAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTAAATAAA 146265 || || || ||| |||| || || | || | ||||| ||| ||| || Sbjct 840 AAGGAGTCTACTCTCCACTTGGTCCTCAGACTTAGAGGTGGTCAATGAA 888 Score = 100 bits (110), Expect = 4e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAAC-ATAAC 146090 || |||| ||| | || || | || || || || || ||| ||||||| || | || | Sbjct 199 TGTAAATTTTCGTTAAGACTCTCACTGGCAAGACCATCACTCTTGATGTTGAGCCATCA- 257 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 ||||| ||| ||||||| || ||| || ||| ||||| || || |||||||||||| Sbjct 258 GATACCATTGAAAATGTCAAGGCTAAGATCCAAGACAAAGAGGGAATCCCACCCGATCAA 317 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 || ||||||||||| || || || || || || || ||||| | | || || || Sbjct 318 CAGAGACTCATTTTCGCTGGAAAGCAGTTGGAAGACGGCAGAACCCTCTCCGACTACAAC 377 Query 146211 ATACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 || || || || || || | || || || || || | |||||||||| Sbjct 378 ATCCAGAAGGAGTCAACCCTTCACTTGGTCTTGAGACTCAGAGGAGGTA 426 >seq533 Length=4588 Score = 116 bits (128), Expect = 6e-21 Identities = 159/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 146037 ATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACGATACT 146096 || ||| | || || || || || || || |||||| |||||||||| | | ||||| Sbjct 4437 ATCTTCGTCAAGACTTTGACCGGTAAGACTATTACTCTTGATGTAGAGCCTTCTGATACC 4378 Query 146097 ATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAACAAAGA 146156 || |||| || || || || ||| |||||||| ||||| || |||||||| ||| Sbjct 4377 ATCGAAAACGTTAAGGCCAAGATTCAAGACAAAGAAGGTATTCCCCCTGATCAACAGAGA 4318 Query 146157 CTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATATACAA 146216 ||||| ||||| || || | || || || ||||| || | ||||| || || ||| Sbjct 4317 CTCATCTTTGCTGGAAAGTAGTTGGAAGACGGCAGAACCTTGTCTGATTACAACATCCAA 4258 Query 146217 AAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGT 146258 |||||||| ||| |||| || || || || | ||||| ||| Sbjct 4257 AAAGAATCAACTCTCCACTTGGTCTTGAGACTTAGAGGTGGT 4216 >seq18203 Length=1365 Score = 109 bits (120), Expect = 9e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAAC-ATAAC 146090 ||||||| ||| | || || | || ||||| || || ||| | || || || | || | Sbjct 407 TGCAAATCTTCGTGAAGACCCTCACTGGAAAGACCATCACTTTGGACGTTGAGCCATCA- 465 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 || |||||| |||| || || || || ||| ||| ||||| ||||| ||||||||| Sbjct 466 GACACTATTGAAAACGTCAAGGCCAAGATCCAAGATAAGGAAGGTATTCCCCCCGATCAA 525 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 ||||||||||||||||| || || ||| | || ||| ||||| | | || || || Sbjct 526 CAAAGACTCATTTTTGCTGGAAAGCAACTTGAAGATGGAAGAACCCTTAGTGACTACAAC 585 Query 146211 ATACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 || ||||| || || || | || || || | |||| ||||| |||| Sbjct 586 ATCCAAAAGGAGTCAACCCTTCACTTGGTCCTCAGATTGAGAGGTGGTA 634 Score = 109 bits (120), Expect = 9e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | || || | || ||||| || || || | || || || | | | Sbjct 635 TGCAAATCTTCGTCAAGACCCTTACCGGAAAGACCATCACCTTGGACGTCGAGCCTTCAG 694 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| | ||||| || || || ||| || ||||| || ||||||||||||| Sbjct 695 ATACCATTGAGAATGTCAAGGCAAAGATCCAAGACAAGGAAGGTATCCCACCCGATCAAC 754 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 |||||||||| || || || || ||| | || ||| ||||| | |||| || || | Sbjct 755 AAAGACTCATCTTCGCCGGAAAGCAACTTGAAGATGGCAGAACTCTTTCAGACTACAACA 814 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | || |||||||| ||| | ||||| || | |||| ||||| |||| Sbjct 815 TCCAGAAAGAATCTACTCTTCATTTGGTCCTCAGATTGAGAGGTGGTA 862 Score = 87.8 bits (96), Expect = 3e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | || || | ||||| || || || ||| | || || || | | Sbjct 179 TGCAAATCTTCGTTAAGACCCTCACAGGCAAGACCATCACTTTGGACGTTGAGCCCTCTG 238 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || || ||||||| || || || ||| || ||||| || ||||||||||||| Sbjct 239 ACACCATCGAAAATGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCACCCGATCAAC 298 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 |||||||||| || || || || ||| | || || ||||| || | || || || | Sbjct 299 AAAGACTCATCTTCGCTGGCAAGCAACTCGAAGACGGAAGAACCTTGTCCGACTACAACA 358 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | || || ||||| || | || || || | || | |||||||||| Sbjct 359 TCCAGAAGGAATCAACCCTTCACTTGGTTCTCAGACTCAGAGGAGGTA 406 Score = 86.0 bits (94), Expect = 1e-11 Identities = 166/241 (69%), Gaps = 3/241 (1%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAAC-ATAAC 146090 ||||||| ||| | || || | || ||||| || || || | ||||| || | || | Sbjct 863 TGCAAATCTTCGTCAAGACCCTCACCGGAAAGACCATCACCCTCGATGTTGAGCCATCA- 921 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 || || ||| |||| || || || || | || ||||| || |||||||||||| Sbjct 922 GACACCATTGAAAACGTGAAGGCCAAGATCTAGGACAAGGAAGGTATCCCACCCGATCAA 981 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 |||||||| || || || ||||| ||| | || || ||||| || | || || || Sbjct 982 CAAAGACTTATCTTCGCTGGTAAGCAACTTGAAGACGGCAGAACCTTGTCCGACTACAAC 1041 Query 146211 ATACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTAAATAAATATTG 146270 || ||||| || || ||| |||| || || | || | ||||| ||| || ||| ||| Sbjct 1042 ATCCAAAAGGAGTCAACTCTCCACTTGGTCCTCAGACTTAGAGGTGGTTGATCAAT-TTG 1100 Query 146271 A 146271 | Sbjct 1101 A 1101 >seq2220 Length=3178 Score = 100 bits (110), Expect = 4e-16 Identities = 158/224 (71%), Gaps = 2/224 (1%) Strand=Plus/Minus Query 146035 AAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATA-ACGAT 146093 || |||| | ||||| |||||||| ||||| || || || || ||| | | || Sbjct 900 AATTATTTGTCAAAACCTTAACAGGCAAAACTATCACAATCTATACT-AACTCAGATGAG 842 Query 146094 ACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAACAA 146153 || ||| || | | ||| |||||| || |||||| ||||||||||| || |||||| Sbjct 841 ACCATTGAAGAATTTAAACTTAAAATTTAAGATAAAGAGGGCATTCCACCTGACCAACAA 782 Query 146154 AGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATATA 146213 ||||||||||||||||||| ||||||| ||| ||||| | ||| || || || Sbjct 781 AGACTCATTTTTGCAGGTATGTAATTAGAAGATGGAAGAACTCTGGGAGACTACAACATT 722 Query 146214 CAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 |||| || || || | ||||| || | || | ||||| || Sbjct 721 CAAACTGAGTCCACACTGCATTTGGTTCTTAGACTCAGAGGTGG 678 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 785945703437360