Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F001297925.1_202015-09-23] 22,458 sequences; 57,457,034 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq14202 122 7e-23 seq533 116 3e-21 seq18203 98.7 8e-16 >seq14202 Length=1113 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| ||||| | || ||||| ||||| || |||||||||||||| || || || | | Sbjct 652 CCTCCTCTCAATCTAAGAACCAAGTGAAGGGTAGATTCTTTTTGAATATTGTAGTCTGAA 593 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||| | ||| || ||||| ||||| || | || | |||||| ||||| || || Sbjct 592 AGGGTTCTTCCATCTTCAAGTTGCTTGCCGGCGAAGATAAGTCTTTGTTGATCGGGTGGG 533 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 ||||| ||||| ||||| | ||| || || |||| | ||||| || | || || Sbjct 532 ATACCTTCTTTATCTTGGATCTTTGCCTTAACGTTTTCAATGGTGTCTGATGGCTCGACG 473 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||| || || || || || || | ||| ||||| || || ||||| Sbjct 472 TCAAGGGTGATGGTCTTTCCGGTAAGGGTCTTAACGAAGATTTGCAT 426 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| || | | || ||||| ||||| || || || || || ||||| || || | Sbjct 424 CCTCCTCTGAGTCTCAAGACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAGTCGGAG 365 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||| | || || | || || ||||| | || | ||| || ||||| || || Sbjct 364 AGGGTTCTGCCGTCTTCCAACTGCTTTCCAGCGAAAATGAGTCTCTGTTGATCGGGTGGG 305 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || |||||||||||||| | || |||||| |||| | || || || | || || Sbjct 304 ATTCCCTCTTTGTCTTGGATCTTAGCCTTGACATTTTCAATGGTATCTGATGGCTCAACA 245 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 |||||||| || || |||||||| | || ||||| || || | ||| || Sbjct 244 TCAAGAGTGATGGTCTTGCCAGTGAGAGTCTTAACGAAAATTTACATGTT 195 >seq533 Length=4588 Score = 116 bits (128), Expect = 3e-21 Identities = 155/213 (73%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 29578 ACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCG 29637 ||||| || || || ||||||||||| ||||| ||||| | | ||| | || || Sbjct 4235 ACCAAGTGGAGAGTTGATTCTTTTTGGATGTTGTAATCAGACAAGGTTCTGCCGTCTTCC 4294 Query 29638 AGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGT 29697 | | || |||||| | || | ||| || ||||| || |||||||| ||||||||||| Sbjct 4295 AACTACTTTCCAGCAAAGATGAGTCTCTGTTGATCAGGGGGAATACCTTCTTTGTCTTG- 4353 Query 29698 AATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTT 29756 ||| || | || || |||| | || |||||| | ||||| |||||||| ||||| || Sbjct 4354 AATCTTGGCCTTAACGTTTTCGATGGTATCAGAAGGCTCTACATCAAGAGTAATAGTCTT 4413 Query 29757 GCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || || || || || || || |||| |||||| Sbjct 4414 ACCGGTCAAAGTCTTGACGAAGATCTACATTTT 4446 >seq18203 Length=1365 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || ||||| | || ||||||||||| || |||||||| || ||||| || || | | Sbjct 860 CCACCTCTCAATCTGAGGACCAAATGAAGAGTAGATTCTTTCTGGATGTTGTAGTCTGAA 801 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || | ||| || ||||| || || || | || | |||||| ||||| || || Sbjct 800 AGAGTTCTGCCATCTTCAAGTTGCTTTCCGGCGAAGATGAGTCTTTGTTGATCGGGTGGG 741 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 ||||| || |||||||| | ||| |||||| | || | || || ||| | || || Sbjct 740 ATACCTTCCTTGTCTTGGATCTTTGCCTTGACATTCTCAATGGTATCTGAAGGCTCGACG 681 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || | || || || || || || | ||| || || || || ||||| Sbjct 680 TCCAAGGTGATGGTCTTTCCGGTAAGGGTCTTGACGAAGATTTGCAT 634 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385113762856578