Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F001297925.1_202015-09-23] 22,458 sequences; 57,457,034 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq4020 248 6e-60 seq16738 223 3e-52 seq15364 138 8e-27 seq10351 104 2e-16 seq2444 102 6e-16 >seq4020 Length=2623 Score = 248 bits (274), Expect = 6e-60 Identities = 942/1459 (65%), Gaps = 37/1459 (3%) Strand=Plus/Plus Query 281441 ATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGT 281500 || || |||||||| | ||| || |||||||| ||||| ||||| ||||| |||| ||| Sbjct 741 ATTCCGTTGGCATCAATATCGAAAGTGACTTCGATTTGTGGGACACCTCTGGGAGCGGGT 800 Query 281501 GGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCA 281560 ||||| ||||| | || ||| | || || | ||||| || || | | || |||| Sbjct 801 GGGATACCTTCAAGGTTGAATTTACCGAGTAAGTGGTTATCCTTGGTCATTGATCTTTCA 860 Query 281561 CCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCTG 281620 || ||||| | ||| || || | | ||| || || | ||| || || || | | Sbjct 861 CCTTCGAAGACTTGAATCAAGACACCTGGTTGGTTGTCAGCATAGGTGGTGAAGATTTGT 920 Query 281621 GATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCAGCT 281680 || || || || || || |||||||| ||| | | ||||| | ||| ||||| Sbjct 921 GACTTCTTGGTTGGGATGGTAGTGTTTCTTGGAATGAGAACAGTCATGACACCTCCAGCA 980 Query 281681 GTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATT-TTGAAGTTTTTC 281739 ||||| | ||| || || || || ||||| | |||| | || |||| ||| | Sbjct 981 GTTTCAATACCGGTTGAGAGTGGGGTAACATCCAAAAGGAGGAGATCCTTGACGTTGCTG 1040 Query 281740 ATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCATC 281799 || || ||| |||||||| ||||| | |||||||| || |||||||||||||| Sbjct 1041 -TCTCCTTCTCCAGTGAGAATAGCAGCTTGGACGGCAGCACCGTAAGCAACAGCTTCATC 1099 Query 281800 AGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCTTAC 281859 || || | | | || || | || || ||||| || | || || | |||| || Sbjct 1100 TGGGTTGATTGATCTGTTAAGGGTCTTTCCGTTGAAGAAGTCGGAGAGCATTTGTTGAAC 1159 Query 281860 CTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTATCCAG 281919 ||| || || | | ||| || ||||| || |||| ||| || | ||| || | || Sbjct 1160 CTTGGGGATTCTGGTTGAACCACCAACCAAGACAACTTCGTGGATTTGTCCCTTGGCGAG 1219 Query 281920 TTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCTCTAAACAAGTCTGAACA 281979 ||| ||| | || ||||| |||||| | || ||| || | || ||| Sbjct 1220 GCCTGAGTCCTTAAGGACGTTTTCTACGGGTGGCATACATTTTCTGAAGAGATCCATACA 1279 Query 281980 AAGTTCTTCGAATTTAGCTCTAG---TAAGAGTGACATTATAATCAATTCCTTCGAACAA 282036 ||||| ||||| |||||||| | | ||||| || | || || || | ||| Sbjct 1280 GAGTTCCTCGAACTTAGCTCTTGAGATTTGAGTG---TTGAAGTCTTCACCCTC-AGCAA 1335 Query 282037 -AGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCAC 282095 || || |||||| | | |||| | || || || | || || || | Sbjct 1336 GAGTTTCGCATTCAATTGGGGCTTGATGGGCAGCTGAAAGAATTCTCTTTGCCTTCTCGC 1395 Query 282096 ATGCTGTCCTTAGTCTTCGTAAGGCTTTTGC----TGATTGAT-TCAA-ATCTGTTTTAT 282149 || || || ||||||| | ||| | || ||||| |||| | | || || | Sbjct 1396 ATTGAGTTCTGAGTCTTCTGAGTGCTCTGGCGTTTCCGTTGATGTCAATACCAGTCTTCT 1455 Query 282150 ATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACCTC 282209 ||||||| || |||| || | ||||| | || || ||||||||||||| Sbjct 1456 ------TCTTGAATTCAGCAACGCAATAGTCGACAAGTCTGTTGTCGAAATCTTCACCTC 1509 Query 282210 CCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAA 282269 |||| | || | || || || | |||| ||| | || ||||||| | | | Sbjct 1510 CCAAATGGGTGTGACCGTTGGTGGCCTTAACTTCGAAGATACCTTCTTCAATGGTGAGGA 1569 Query 282270 GAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCT-TTGTCT 282328 | | ||||| || |||||||| | ||| || || || || || ||||| ||| Sbjct 1570 GGGAGACATCGAAAGTACCACCACCGAGATCGAAGATGAGAACGTT--TTTCTCTTGGGA 1627 Query 282329 TGGTTT-TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAA 282387 || ||| || || | ||| || |||| ||| ||||||||||| || || || ||||| | Sbjct 1628 TGATTTCTTGTCCAAACCGTAAGCAATAGCGGCAGCAGTTGGCTCGTTGATGATTCTGAG 1687 Query 282388 AACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAA 282447 ||| || | ||| | || | || ||||| || ||||||||||| ||||| ||||| || Sbjct 1688 AACGTTCATACCTGAGATGGTACCAGCATCCTTGGTGGCTTGTCTCTGTGAGTCGTTGAA 1747 Query 282448 ATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTTGCTGT 282507 ||| || || ||||| ||||| || | | || ||| || |||||| || | Sbjct 1748 ATAAGCTGGGACAGTGATAACAGCGTTCTTGACAGTCTTTGAAAGATAAGCTTCAGCGAT 1807 Query 282508 TTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTG-GAGAATATTGCTTGGATT 282566 || ||||| || | || | ||| ||||| |||| ||| | | | | | | ||||| || Sbjct 1808 TTCCTTCATCTTGATCAAGACCATAGATGAGATTTCTTCAGCGTGGA-ACTTCTTGGCTT 1866 Query 282567 CATTTTGATATGATACTTCAAAATATGGTTTATTACC--AACATTAAT-AACTTTAAATG 282623 || | || || ||| ||| || | | | | || | || || |||| Sbjct 1867 CACCCTTGTAGTCGACAACAATGACTGGCTTGTCAGCTGGTCCTTGCTCGACCTTGAATG 1926 Query 282624 GCCAATATTTCATATCTGATTGAACACTTTG---GTCATTAAAATCTCTACCAATTAATC 282680 |||||| ||||| || ||||| |||| ||| || | ||| || || | || Sbjct 1927 GCCAATGCTTCATGTCGTCTTGAA---TTTGCTTCTCAGAGAATTTTCTTCCGATAAGTC 1983 Query 282681 GTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTC 282740 || || || || | || || | || || ||| |||||| ||||||| |||| Sbjct 1984 TCTTGGCGTCGAAGACGGTGTTCTTGGGGTTTCTAGCAACTTGATTCTTGGCTGAGTCTC 2043 Query 282741 CAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGAT 282800 |||| || ||| || || || | || ||||||||||| ||| || ||||||| Sbjct 2044 CAATAAGTCTCTCTTCTTCAGTGAAAGCGACGTATGATGGAGTGGTGTTGTTTCCTTGAT 2103 Query 282801 CATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTC 282860 | || | || ||||| ||||| | || |||| |||||||| ||| |||| || | Sbjct 2104 CGTTGGGGATGATTTCTACTTTGTCGTTGAGCCACACACCTACGCAAGAGTAAGTGGTGC 2163 Query 282861 CTAAATCAATACCAATAGC 282879 | | ||| || |||||||| Sbjct 2164 CGAGATCTATTCCAATAGC 2182 Score = 91.5 bits (100), Expect = 1e-12 Identities = 112/152 (74%), Gaps = 1/152 (1%) Strand=Plus/Plus Query 86116 AAACCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATTATTTTAAGAACATCTAAACCC 86175 |||||||| |||| ||| || |||||||| || || || ||| | ||||| | | ||| Sbjct 1641 AAACCGTAAGCAATAGCGGCAGCAGTTGGCTCGTTGATGATTCTGAGAACGTTCATACCT 1700 Query 86176 GCAATTTTAGCAGAATCAAGAGTTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGTACA 86235 | || || ||| ||| || ||||||||||||| ||| || ||||| ||||| ||| Sbjct 1701 GAGATGGTACCAGCATCCTTGGTGGCTTGTCTCTGTGAGTCGTTGAAATAAGCTGGGACA 1760 Query 86236 GTAATAACTGCTTTATTAATAGGTTTTTGTAA 86267 || ||||| || || || | | || |||| || Sbjct 1761 GTGATAACAGCGTTCTTGACA-GTCTTTGAAA 1791 >seq16738 Length=2328 Score = 223 bits (246), Expect = 3e-52 Identities = 727/1113 (65%), Gaps = 25/1113 (2%) Strand=Plus/Minus Query 281451 CATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTT 281510 |||| | || || |||||||||||||| || || ||||| | || |||||||| || Sbjct 1679 CATCGATTTCGAAAGTGACTTCAATTTGGGGAACTCCTCTTGGGGCGGGTGGGATACCAG 1620 Query 281511 CCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAA 281570 | || ||| | || | || ||||| || || | ||| |||||| ||||| | Sbjct 1619 TGAGATCGAATTTACCTAACAAATGGTTATCCTTGGTCATGGTTCTTTCACCTTCGAAGA 1560 Query 281571 TTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCTGGATTTTTTAC 281630 ||| || || || ||||| | ||| ||| || || || | || || || | Sbjct 1559 CTTGAATGGTGACAGTGGTTTGTTGGTCTTGATAGGTAGTGAAGGTTTGAGACTTCTTTC 1500 Query 281631 AAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCAGCTGTTTCTAAAC 281690 || || || ||| | || || |||||||| | ||| ||| | || || | || Sbjct 1499 CTGGGATGACGGTACCTCTGTTGATGATCTTGGTCATGACACCTCCAACGGTCTCAATAC 1440 Query 281691 CAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTTTCATCAGTTTGAC 281750 | || | ||| || || ||||| | | | ||||| || | || || ||||| || Sbjct 1439 CGAGGGTAAGTGGGGTTACATCGATCAAAAGAATATCTTTAGTTTCCTCTGAAGTTTCAC 1380 Query 281751 CAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAG 281810 | | | ||| | |||||| ||||| || || || || |||||||| || |||| | Sbjct 1379 CTCCTAAAATTCCACCTTGAACTGCAGCTCCGTAGGCGACGGCTTCATCTGGGTTAATAC 1320 Query 281811 TTTCATTTAGTTTTTTACCATTGAAAAAAT--TTGAAAGAAGTTGTCTTACCTTAGGAAT 281868 | ||| ||| || |||||||| |||| |||| | || | ||||| || || Sbjct 1319 CTCTGTTTGGTTCCTTTCCATTGAAGAAATCCTTGATTAA--TTATTGAACCTTGGGGAT 1262 Query 281869 ACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTATCCAGTTTTGAATC 281928 | || ||| || ||||| | ||| | ||||| | | | ||| | || || ||| Sbjct 1261 TCTAGTTGAACCACCAACGAGTACGACTTCATCAATGTCGGTTTTCTTCATACCTGCATC 1202 Query 281929 CAATAAAACTTTTTCAACGGGTTCAAGAC-CAGCTCTAAACAAGTC--TGAACAAAGTTC 281985 | |||| || ||| |||| |||| | || | ||||| || || |||| ||| Sbjct 1201 GTCGAGGACTTATTAAACTGGTTAAAGAGTCTTCT-TGAACAAATCATTGCACAA--TTC 1145 Query 281986 TTCGAATTTAGCTCTAGTAAGAGTGACATTATAATCAATTCCTTCGAACAAAGAATCAAC 282045 |||||| |||||||||||| || | | |||||| || || | | | |||| Sbjct 1144 CTCGAATCTAGCTCTAGTAATGGTCTCGCTGAGATCAATACCGTCCATAAGATTCTCAAT 1085 Query 282046 TTCAATCGTAGTTTGAGTCGAAGAA-GATAGTGCACGTTTAGCACGTTCACATGCTGTCC 282104 | || | | |||||| | || | || || | | || || |||| | | | | Sbjct 1084 TGAAACCTTGGTTTGA-TGGACGCTTGAAAGATCTCTCTTGGCCTTTTCAACTTCAGCTC 1026 Query 282105 TTAGTCTTCGT-AAGGCTTTTGCTGATTGATTCAAATCTGTTTTATATTTTCTCTTGAAA 282163 |||| |||| || ||| ||| | || | |||| | || | || |||||||| Sbjct 1025 TTAG-CTTCTAGAATGCTCTTGGGTCATCCTTGATATCTTTATTGTTCTTCTTCTTGAAA 967 Query 282164 -TCTTCAACACACCATGTTACA---AGACGATTATCAAAATCTTCACCTCCCAATTTAGT 282219 |||| | | |||| || || | | ||| ||||||||||||||||| | || Sbjct 966 ATCTTAATGAAG---TGTT-CAGTGAGTCTTTGATCGAAATCTTCACCTCCCAAATGGGT 911 Query 282220 ATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTAACATC 282279 || || ||||| || | ||||| ||||| |||| || | ||| | ||||| Sbjct 910 ATCACCGCTAGTAGCGACGACCTCGAAAACTCCATTATCAATAGTGAGAAGGGAGACATC 851 Query 282280 ATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATC 282339 || || ||||| | ||| || | | | ||| | ||| |||| || || || Sbjct 850 GAAAGTACCTCCACCAAGATCGAAGACGATAATGTTCTTCTCTC---CTTGCTTCTTGTC 794 Query 282340 AAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACC 282399 | |||||| |||| ||| ||||||||||| ||||| || ||||||||||||| ||||| Sbjct 793 CATACCATAGGCAATAGCTGCAGCAGTTGGCTCATTGATGATTCTCAAAACATCGAGACC 734 Query 282400 AGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAAC 282459 ||| || || ||||| || || ||||||||||||||||| || |||||||| || || Sbjct 733 AGCGATCAAGCCGGCATCCTTGGTTGCTTGTCTTTGTGAATCATTGAAATATGCTGGGAC 674 Query 282460 AGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTTGCTGTTTGTTTCATTTT 282519 ||| ||||| |||| |||| ||| | || | ||| || || | | ||||| || Sbjct 673 AGTGATAACTGCATGCTTTACGTCTCTACCGAGATAGGCTTCAGCGATCTCCTTCATCTT 614 Query 282520 ACTTAAAATCATTGATGAAATTTGTTCTGGAGA 282552 | | |||||| | ||||| || ||||| || Sbjct 613 GATGAGAATCATAGCTGAAACTTCCTCTGGGGA 581 Score = 93.3 bits (102), Expect = 3e-13 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 86118 ACCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATTATTTTAAGAACATCTAAACCCGC 86177 ||| || |||| |||||| |||||||| ||||| || ||| | | |||||| | ||| || Sbjct 790 ACCATAGGCAATAGCTGCAGCAGTTGGCTCATTGATGATTCTCAAAACATCGAGACCAGC 731 Query 86178 AATTTTAGCAGAATCAAGAGTTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGTACAGT 86237 || | | ||| ||||||||||| |||| ||||| ||||||||||| ||||| Sbjct 730 GATCAAGCCGGCATCCTTGGTTGCTTGTCTTTGTGAATCATTGAAATATGCTGGGACAGT 671 Query 86238 AATAACTGC 86246 |||||||| Sbjct 670 GATAACTGC 662 >seq15364 Length=4951 Score = 138 bits (152), Expect = 8e-27 Identities = 217/311 (70%), Gaps = 0/311 (0%) Strand=Plus/Minus Query 400303 CTAATTTTGACAGAGGGAGATTCAGCTAAAACATTCGCTATGTCTGGCCTTAATGTTATT 400362 || ||||| || || |||||||| || ||| | | || ||| ||| || | ||| || Sbjct 3465 CTTATTTTAACTGAAGGAGATTCTGCAAAATCTCTAGCAATGAGTGGTCTGTAAGTTGTT 3406 Query 400363 GGAAGAGATTATTATGGAGTTTTCCCACTTAGAGGAAAACTTTTGAATGTTAGGGATGCT 400422 || |||||| || ||||||||||||||| ||||||||| | || ||||| || ||| Sbjct 3405 GGCAGAGATCGTTTTGGAGTTTTCCCACTAAGAGGAAAATTATTAAATGTAAGAGATTGC 3346 Query 400423 AGTCCTaaaaaaaTTGCCGATAATGAGGAAATTACAGCAATCaaaaaaaTTGTTGGACTT 400482 || || ||||| ||||| ||||| || | || | |||||| | || | Sbjct 3345 GGTATGAAGTAAATTTTAGATAACGAGGAGATCTAAAATATTATAAAAATACTCGGGTTA 3286 Query 400483 GAACAAGGAAAAGTTTATGATGATCTCAAAGGTTTACGATATGGTAGTATTATGATTCTT 400542 | || | | ||||||||||| || || |||||||| ||| |||||| | Sbjct 3285 TATATGGGTAGATAATATGATGATCTTAAGACATTGCGATATGGATCTATAATGATTATG 3226 Query 400543 GCTGATCAAGATGTTGATGGGTACCATATCAAAGGATTAATCATGAATTTTATCCATTGT 400602 |||||| ||||| |||||| | |||||||| ||| | ||||| || ||||| ||| Sbjct 3225 GCTGATTAAGATCATGATGGATCTCATATCAAGGGACTTATCATAAACTTTATACATAAC 3166 Query 400603 TTTTGGCCATC 400613 || |||||||| Sbjct 3165 TTCTGGCCATC 3155 >seq10351 Length=6027 Score = 104 bits (114), Expect = 2e-16 Identities = 190/273 (70%), Gaps = 4/273 (1%) Strand=Plus/Plus Query 435006 TGTAGAAGGAAAAAGAATTCAAATCAGATTCAATGGTAGAACACTTCCAATGTTCCCTAA 435065 ||| ||||| |||||| ||||| | | || || |||||| | || ||||| || Sbjct 2479 TGTTGAAGGTAAAAGAGTTCAATTTGGCTTTAAATCTAGAACTTTACCTCACTTCCCAAA 2538 Query 435066 ATTTGATGATAGTGCATTCTCCAGAGGTTTTTGTCGTAATTCCTT-TATCGAGGGTCTTG 435124 |||| || || || || | ||||||| ||| | | | || |||| || | || Sbjct 2539 GCATGATTATGGTCCAGCTTCTAAAGGTTTT-GTCATTAATAATTATATC-AGTGGGTTA 2596 Query 435125 GA-CCTTTTGAATTTTTCTTCCAAGTAATGGCTGGTCGTGAAGGTATTATTAATACAGCT 435183 || ||| ||||| || ||||| | |||| || ||||||||| ||||| ||||||| Sbjct 2597 GATCCTCCAGAATTCTTTTTCCATGCTATGGGAGGACGTGAAGGTCTTATTGATACAGCA 2656 Query 435184 ATTAAAACTGCTGATACTGGTTATATTCAAAGAAAACTTGTCAAGATGCTTGAAGATATT 435243 | ||||| | || || || ||||||||||||| ||| || || || |||||||| Sbjct 2657 GTCAAAACATCGGAAACAGGATATATTCAAAGAAGACTCGTAAAAGCTCTAGAAGATATC 2716 Query 435244 AAACAAGAATATGATGGTACAGTGAGAAATGCA 435276 | | ||||||| ||||| ||||| ||| || Sbjct 2717 ATGGTAAAATATGACGGTACTGTGAGGAATTCA 2749 >seq2444 Length=2464 Score = 102 bits (112), Expect = 6e-16 Identities = 121/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 282335 TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTA 282394 ||||||||||| | || | |||||||||||||| || || || |||||| ||| | | Sbjct 1576 TTATCAAGACCGAAGGCGAGTGCAGCAGCAGTTGGCTCGTTGATGATTCTCTTAACTTCA 1635 Query 282395 AGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCA 282454 ||| || ||| | || ||||| || || |||||||| || || || || ||||| || Sbjct 1636 AGATTTGCGATTTTACCAGCATCCTTGGTAGCTTGTCTCTGGGAGTCATTGAAATAAGCT 1695 Query 282455 GGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGC 282498 |||||||||| ||| || || | | | ||| || | |||||| Sbjct 1696 GGAACAGTAACAACAGCCTCCTTGATTGATTTACCTAGATAAGC 1739 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3739527807107508