Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F001297925.1_202015-09-23] 22,458 sequences; 57,457,034 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq14202 111 2e-19 seq18203 102 8e-17 seq533 91.5 1e-13 >seq14202 Length=1113 Score = 111 bits (122), Expect = 2e-19 Identities = 145/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 137215 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 137274 ||||| || ||||| |||||||| ||||||| || || |||||| ||||||||||| Sbjct 850 GTAGACTCCTTTTGGATGTTGTAGTCGCTCAAAGTTCTGCCGTCTTCAAGTTGTTTACCG 791 Query 137275 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 137334 || |||| || | ||| |||||||| || || ||||| ||||| || || ||| Sbjct 790 GCGAAGATGAGTCTTTGTTGATCGGGTGGAATACCTTCCTTGTCCTGGATCTTGGCTTTG 731 Query 137335 AGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 137394 | | || | ||||| | ||||| || || | ||| | ||||| |||||||| || Sbjct 730 ACATTCTCGATGGTGTCGGATGGTTCGACGTCCAAAGTGATAGTCTTACCGGTCAAGGTC 671 Query 137395 TTTACGAATATTTGCATAGCT 137415 || ||||| || | |||| || Sbjct 670 TTCACGAAGATCTACATACCT 650 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 ||||||| || | | ||| || |||| |||||||||||||| || ||||| || Sbjct 652 CCTCCTCTCAATCTAAGAACCAAGTGAAGGGTAGATTCTTTTTGAATATTGTAGTCTGAA 593 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | || || ||||| ||||| || || || |||| || | ||| |||||||| || Sbjct 592 AGGGTTCTTCCATCTTCAAGTTGCTTGCCGGCGAAGATAAGTCTTTGTTGATCGGGTGGG 533 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || |||||||| || || ||| || | | ||| | ||||||| || || || Sbjct 532 ATACCTTCTTTATCTTGGATCTTTGCCTTAACGTTTTCAATGGTGTCTGATGGCTCGACG 473 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 137415 |||| || | ||||| ||||| | || || ||||| ||||||||| || Sbjct 472 TCAAGGGTGATGGTCTTTCCGGTAAGGGTCTTAACGAAGATTTGCATACCT 422 >seq18203 Length=1365 Score = 102 bits (112), Expect = 8e-17 Identities = 156/221 (71%), Gaps = 1/221 (0%) Strand=Plus/Minus Query 137202 AACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTC 137261 ||| || |||| || ||||| || || |||||||| ||| || || || |||||| Sbjct 387 AACCAAGTGAAGGGTTGATTCCTTCTGGATGTTGTAGTCGGACAAGGTTCTTCCGTCTTC 328 Query 137262 GAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 137321 |||||| || ||||| |||| || | ||| |||||||| || || ||||| ||||| Sbjct 327 GAGTTGCTTGCCAGCGAAGATGAGTCTTTGTTGATCGGGTGGGATTCCTTCCTTGTCTTG 268 Query 137322 AATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTT 137381 || || || | | ||| | ||||| | ||| || || || | ||| | ||||| Sbjct 267 GATCTTGGCCTTGACATTTTCGATGGTGTCAGAGGGCTCAACGTCCAAAGTGATGGTCTT 208 Query 137382 GCCGGTCAATGTTTTTACGAATATTTGCATAGCTTATGTTT 137422 ||| || | || || ||||| |||||||| | |||| ||| Sbjct 207 GCCTGTGAGGGTCTTAACGAAGATTTGCAT-GTTTATTTTT 168 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 137203 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCG 137262 || ||||||| ||||||||||| || |||||||| || | || || ||||| Sbjct 842 ACCAAATGAAGAGTAGATTCTTTCTGGATGTTGTAGTCTGAAAGAGTTCTGCCATCTTCA 783 Query 137263 AGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTA 137322 ||||| || || || |||| || | ||| |||||||| || || ||||| ||||| Sbjct 782 AGTTGCTTTCCGGCGAAGATGAGTCTTTGTTGATCGGGTGGGATACCTTCCTTGTCTTGG 723 Query 137323 ATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTG 137382 || ||| || | | || | || |||| || || || || | || | ||||| Sbjct 722 ATCTTTGCCTTGACATTCTCAATGGTATCTGAAGGCTCGACGTCCAAGGTGATGGTCTTT 663 Query 137383 CCGGTCAATGTTTTTACGAATATTTGCATA 137412 ||||| | || || ||||| ||||||||| Sbjct 662 CCGGTAAGGGTCTTGACGAAGATTTGCATA 633 >seq533 Length=4588 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 137199 CAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTC 137258 ||| || || || | || ||||||||||| ||||||||||| || || || ||| Sbjct 4231 CAAGACCAAGTGGAGAGTTGATTCTTTTTGGATGTTGTAATCAGACAAGGTTCTGCCGTC 4290 Query 137259 TTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 137318 ||| | | || |||||| |||| || | || ||||| || || || ||||||||||| Sbjct 4291 TTCCAACTACTTTCCAGCAAAGATGAGTCTCTGTTGATCAGGGGGAATACCTTCTTTGTC 4350 Query 137319 GGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGT 137378 ||| || || | | ||| | || || | || ||||| |||| ||| | || Sbjct 4351 TTGAATCTTGGCCTTAACGTTTTCGATGGTATCAGAAGGCTCTACATCAAGAGTAATAGT 4410 Query 137379 CTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 ||| |||||||| || || ||||| || | ||| Sbjct 4411 CTTACCGGTCAAAGTCTTGACGAAGATCTACAT 4443 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488406853485600