Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F001297925.1_202015-09-23] 22,458 sequences; 57,457,034 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq18203 188 1e-42 seq533 176 9e-39 seq14202 170 4e-37 seq4265 89.7 1e-12 seq11755 86.0 1e-11 seq2220 84.2 4e-11 >seq18203 Length=1365 Score = 188 bits (208), Expect = 1e-42 Identities = 185/239 (77%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||||||||| | | ||||| ||||| || || ||||| ||||| || || || || | Sbjct 406 TACCTCCTCTGAGTCTGAGAACCAAGTGAAGGGTTGATTCCTTCTGGATGTTGTAGTCGG 347 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | |||| |||||||| ||||| || ||||| ||||| |||||||||||||| || | Sbjct 346 ACAAGGTTCTTCCGTCTTCGAGTTGCTTGCCAGCGAAGATGAGTCTTTGTTGATCGGGTG 287 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | ||||||||||| ||||| ||||| || || |||||||| || || ||| || || | Sbjct 286 GGATTCCTTCCTTGTCTTGGATCTTGGCCTTGACATTTTCGATGGTGTCAGAGGGCTCAA 227 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATTATATTT 82820 | |||||||| || ||||||||||| | ||||| || || || ||||| |||| ||| Sbjct 226 CGTCCAAAGTGATGGTCTTGCCTGTGAGGGTCTTAACGAAGATTTGCATGTTTATTTTT 168 Score = 188 bits (208), Expect = 1e-42 Identities = 179/229 (78%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| |||||||| | || || || || ||||||||||||||||| || || || || | Sbjct 862 TACCACCTCTCAATCTGAGGACCAAATGAAGAGTAGATTCTTTCTGGATGTTGTAGTCTG 803 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | ||| |||| || ||||| ||||| ||||| || ||||| |||||||||||||| || | Sbjct 802 AAAGAGTTCTGCCATCTTCAAGTTGCTTTCCGGCGAAGATGAGTCTTTGTTGATCGGGTG 743 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||| ||||| |||||||| || ||||| ||||| ||||| ||| || | Sbjct 742 GGATACCTTCCTTGTCTTGGATCTTTGCCTTGACATTCTCAATGGTATCTGAAGGCTCGA 683 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | ||||| || || ||||| || || | ||||| || || || ||||| Sbjct 682 CGTCCAAGGTGATGGTCTTTCCGGTAAGGGTCTTGACGAAGATTTGCAT 634 Score = 161 bits (178), Expect = 2e-34 Identities = 173/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| |||||||| | || || ||||| || || || || || || || || || ||| Sbjct 634 TACCACCTCTCAATCTGAGGACCAAGTGAAGGGTTGACTCCTTTTGGATGTTGTAGTCAC 575 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 || |||| || ||||| ||||| ||||||||||| || |||||||||||||| || | Sbjct 574 TAAGGGTTCTTCCATCTTCAAGTTGCTTTCCAGCAAAAATGAGTCTTTGTTGATCGGGGG 515 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||||||||| ||||| || || || |||||||| || || || || | Sbjct 514 GAATACCTTCCTTATCTTGGATCTTGGCCTTGACGTTTTCAATAGTGTCTGATGGCTCAA 455 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | |||||||| || ||||| || || | ||||| || || || ||||| Sbjct 454 CGTCCAAAGTGATGGTCTTTCCAGTGAGGGTCTTCACGAAGATTTGCAT 406 Score = 127 bits (140), Expect = 4e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 ||| ||||| | | || || ||||| ||||| || || || || || || || || || Sbjct 1089 ACCACCTCTAAGTCTGAGGACCAAGTGGAGAGTTGACTCCTTTTGGATGTTGTAGTCGGA 1030 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 | |||| |||||||| ||||| || ||||| ||||| |||||||||||||| || || Sbjct 1029 CAAGGTTCTGCCGTCTTCAAGTTGCTTACCAGCGAAGATAAGTCTTTGTTGATCGGGTGG 970 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 || |||||||| || | ||||| || || || |||||||| || || || || || Sbjct 969 GATACCTTCCTTGTCCTAGATCTTGGCCTTCACGTTTTCAATGGTGTCTGATGGCTCAAC 910 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | || || ||||| || || | ||||| || || || ||||| Sbjct 909 ATCGAGGGTGATGGTCTTTCCGGTGAGGGTCTTGACGAAGATTTGCAT 862 >seq533 Length=4588 Score = 176 bits (194), Expect = 9e-39 Identities = 178/232 (77%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 ||| ||||| | | || || ||||| ||||| |||||||| || || || |||||||| Sbjct 4216 ACCACCTCTAAGTCTCAAGACCAAGTGGAGAGTTGATTCTTTTTGGATGTTGTAATCAGA 4275 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 | |||| |||||||| | | |||||||||||||| ||||| |||||||| || || Sbjct 4276 CAAGGTTCTGCCGTCTTCCAACTACTTTCCAGCAAAGATGAGTCTCTGTTGATCAGGGGG 4335 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 || ||||| || ||||||||||| || || || ||||| || |||||| ||| ||||| Sbjct 4336 AATACCTTCTTTGTCTTGAATCTTGGCCTTAACGTTTTCGATGGTATCAGAAGGCTCTAC 4395 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATT 82814 || | ||| || ||||| || ||||| ||||| || || |||| |||| || Sbjct 4396 ATCAAGAGTAATAGTCTTACCGGTCAAAGTCTTGACGAAGATCTACATTTTT 4447 >seq14202 Length=1113 Score = 170 bits (188), Expect = 4e-37 Identities = 177/232 (76%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 82579 ACCTACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAAT 82638 || ||||||||||||| | ||||| ||||| || ||||||||||| || ||||| || | Sbjct 657 ACATACCTCCTCTCAATCTAAGAACCAAGTGAAGGGTAGATTCTTTTTGAATATTGTAGT 598 Query 82639 CAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTG 82698 | || || |||| || ||||| ||||| || || || ||||| |||||||||||||| | Sbjct 597 CTGAAAGGGTTCTTCCATCTTCAAGTTGCTTGCCGGCGAAGATAAGTCTTTGTTGATCGG 538 Query 82699 GAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTT 82758 | || || ||||| |||||||| |||||||| || || |||||||| || || || | Sbjct 537 GTGGGATACCTTCTTTATCTTGGATCTTTGCCTTAACGTTTTCAATGGTGTCTGATGGCT 478 Query 82759 CTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || || | || || ||||| || || | ||||| || || || ||||| Sbjct 477 CGACGTCAAGGGTGATGGTCTTTCCGGTAAGGGTCTTAACGAAGATTTGCAT 426 Score = 159 bits (176), Expect = 7e-34 Identities = 172/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 ||| ||||| | | || || ||||| |||||||| || || || || || || || Sbjct 881 ACCACCTCTAAGTCTGAGGACCAAGTGGAGAGTAGACTCCTTTTGGATGTTGTAGTCGCT 822 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 | | |||| |||||||| |||||||| || || ||||| |||||||||||||| || || Sbjct 821 CAAAGTTCTGCCGTCTTCAAGTTGTTTACCGGCGAAGATGAGTCTTTGTTGATCGGGTGG 762 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 || |||||||| || || ||||| ||||| ||||| || || || || ||||| || Sbjct 761 AATACCTTCCTTGTCCTGGATCTTGGCTTTGACATTCTCGATGGTGTCGGATGGTTCGAC 702 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| || ||||| || ||||| ||||| || || |||| ||| Sbjct 701 GTCCAAAGTGATAGTCTTACCGGTCAAGGTCTTCACGAAGATCTACAT 654 Score = 143 bits (158), Expect = 5e-29 Identities = 169/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||||||||| | | || || ||||| || || || || ||||| || || || || | Sbjct 426 TACCTCCTCTGAGTCTCAAGACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAGTCGG 367 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || |||| |||||||| | || |||||||| || || ||||| |||||||| || | Sbjct 366 AGAGGGTTCTGCCGTCTTCCAACTGCTTTCCAGCGAAAATGAGTCTCTGTTGATCGGGTG 307 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | ||||| || || ||||| ||||| || || ||||||||||| ||||| || || | Sbjct 306 GGATTCCCTCTTTGTCTTGGATCTTAGCCTTGACATTTTCAATGGTATCTGATGGCTCAA 247 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || | ||| || |||||||| || | ||||| || || || | ||| Sbjct 246 CATCAAGAGTGATGGTCTTGCCAGTGAGAGTCTTAACGAAAATTTACAT 198 >seq4265 Length=1783 Score = 89.7 bits (98), Expect = 1e-12 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 82667 TTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTT 82726 ||| ||| ||||||||||||| | ||| |||||||| |||||||||||||||| || Sbjct 754 TTTACCACCAAAGATTAGTCTCAACTAATCAGGAGGTATACCTTCCTTATCTTGAAGTTT 813 Query 82727 TGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGT 82786 ||| | | | | ||||| || ||||| ||| ||||| | ||| || ||| || || Sbjct 814 AGCTCTAATACTCTCAATAGTCTCATTTTATTCAACTTCTAGAGTGATAGTCCGACCAGT 873 Query 82787 CAACGTCTTTACAAATATCTGCAT 82810 || | || || ||| |||| ||| Sbjct 874 TAAAGCCTATATAAAAATCTACAT 897 >seq11755 Length=645 Score = 86.0 bits (94), Expect = 1e-11 Identities = 124/175 (71%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 50713 TTTTCGAATATGATTTGAGCTATTCTATCACCCTTGGATACATTAAATTGTGTAGAACCG 50772 ||||||| || | |||||| | |||||| || | ||| | || | | | || | Sbjct 461 TTTTCGATGATAAGTTGAGCAACTCTATCGCCAACGCTTACTTAGAAGTCTACATCACTG 402 Query 50773 AAATTAAATAATAGAACACTTACGTTACCTCTATAGTCTGAGTCAATTACACCAGCACCT 50832 || ||||| | ||| || |||| | ||||||||||| | || || |||||||| || Sbjct 401 AAGTTAAAGAGTAGCACTTTTACTTCCCCTCTATAGTCAGCATCGATCACACCAGCTCCC 342 Query 50833 ACGTCTATAAAATAATTATAAGCAAGCCCTGATCTAGGAGCTATTCTACCGTAGT 50887 || || || |||| || |||||| ||||||||||| || ||||| || |||| Sbjct 341 ACATCAATGAAATTCTTTGCAGCAAGTCCTGATCTAGGGGCGATTCTTCCATAGT 287 >seq2220 Length=3178 Score = 84.2 bits (92), Expect = 4e-11 Identities = 146/207 (71%), Gaps = 4/207 (2%) Strand=Plus/Plus Query 82599 AGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCT 82658 ||||| || ||||| || || || | || || || || || ||| |||| || ||| Sbjct 693 AGAACCAAATGCAGTGTGGACTCAGTTTGAATGTTGTAGTCTCCCAGAGTTCTTCCATCT 752 Query 82659 TCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCT 82718 |||| || | || ||||| || ||||||||||| || || || || || || |||||| Sbjct 753 TCTAATTACATACCTGCAAAAATGAGTCTTTGTTGGTCAGGTGGAATGCCCTCTTTATCT 812 Query 82719 TGAATCTTTGCTTTTACATT-TTCAATCGTATCATTAGGTTCTACT-TCCAAAGTTATCG 82776 | ||| ||| |||| ||| |||||| || |||| | | || | | | || || | Sbjct 813 TAAAT-TTTAAGTTTAAATTCTTCAATGGTCTCATCTGAGT-TAGTATAGATTGTGATAG 870 Query 82777 TCTTGCCTGTCAACGTCTTTACAAATA 82803 | |||||||| || || || ||||||| Sbjct 871 TTTTGCCTGTTAAGGTTTTGACAAATA 897 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981544685973262