Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F001297925.1_202015-09-23] 22,458 sequences; 57,457,034 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq18203 109 5e-19 >seq18203 Length=1365 Score = 109 bits (120), Expect = 5e-19 Identities = 154/215 (72%), Gaps = 1/215 (0%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 || || | ||| || || ||||| || ||||| ||| || || ||| ||||| Sbjct 383 AAGTGAAGGGTTGATTCCTTCTGGATGTTGTAGTCGGACAAGGTTCTTCCGTCTTCGAGT 324 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 |||||||| ||| | ||||| | || || ||||| ||||| ||||||||||| |||| Sbjct 323 TGCTTGCCAGCGAAGATGAGTCTTTGTTGATCGGGTGGGATTCCTTCCTTGTCTTGGATC 264 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || ||||| | || | ||||| | |||||| ||||| | |||| ||| ||||| Sbjct 263 TTGGCCTTGACATTTTCGATGGTGTCAGAGGGCTCAACGTCCAAAGTGATGGTCTTGCCT 204 Query 133635 GTCAGAGTTTTTACGAAAATCTGCATGGCTTATTT 133669 || || || || ||||| || ||||| | |||||| Sbjct 203 GTGAGGGTCTTAACGAAGATTTGCAT-GTTTATTT 170 Score = 100 bits (110), Expect = 3e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 || || || ||||| || ||| | ||||| | || || ||||| ||||| ||||||||| Sbjct 788 TCTTCAAGTTGCTTTCCGGCGAAGATGAGTCTTTGTTGATCGGGTGGGATACCTTCCTTG 729 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || ||||||| ||||| | ||||| || || | ||||| ||||| | ||||| | Sbjct 728 TCTTGGATCTTTGCCTTGACATTCTCAATGGTATCTGAAGGCTCGACGTCCAAGGTGATG 669 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 || || ||||| || || || ||||| || ||||| Sbjct 668 GTCTTTCCGGTAAGGGTCTTGACGAAGATTTGCAT 634 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 || ||||| || || || ||||| ||| || || ||| || || ||||| || Sbjct 1058 GTTGACTCCTTTTGGATGTTGTAGTCGGACAAGGTTCTGCCGTCTTCAAGTTGCTTACCA 999 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 ||| | || || | || || ||||| ||||| ||||||||||| |||||| ||| Sbjct 998 GCGAAGATAAGTCTTTGTTGATCGGGTGGGATACCTTCCTTGTCCTAGATCTTGGCCTTC 939 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | |||| ||||| | ||||| || |||| ||||| ||| || ||||| || || Sbjct 938 ACGTTTTCAATGGTGTCTGATGGCTCAACATCGAGGGTGATGGTCTTTCCGGTGAGGGTC 879 Query 133644 TTTACGAAAATCTGCAT 133660 || ||||| || ||||| Sbjct 878 TTGACGAAGATTTGCAT 862 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483285091695920