Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F001297925.1_202015-09-23] 22,458 sequences; 57,457,034 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq14466 168 2e-36 seq22165 114 3e-20 seq11726 98.7 2e-15 seq18988 93.3 1e-13 >seq14466 Length=3412 Score = 168 bits (186), Expect = 2e-36 Identities = 329/483 (68%), Gaps = 5/483 (1%) Strand=Plus/Plus Query 110681 TGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAAAATATGTGAATCAAGGTGG 110740 ||| || || |||||| | ||||| ||||| || ||||| | |||||| | ||||| || Sbjct 1453 TGGCCTCGTGCCAATGCTCAGAGTTTTCAATGAGACTGCTAGATATGTCGACCAAGGAGG 1512 Query 110741 T---AAGAGAAATGGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGA 110797 | |||||||| || ||||| ||||| || | ||||| ||||| ||||| | || || Sbjct 1513 TGGCAAGAGAAAGGGTTCATTCGCTATATACTTGGAACCATGGCACGCAGATGTCTTCGA 1572 Query 110798 ATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTA 110857 ||| | |||| | || ||||| || || |||||||||||| | || || || | Sbjct 1573 TTTCCTTCAACTAAGAAAGAATCACGGTAAAGAGGAACAAAGAGCAAGAGACTTGTTCTT 1632 Query 110858 TGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCTCT 110917 || | |||||| |||| ||||||||||| | || |||| | || ||| | || Sbjct 1633 CGCTCTCTGGATTCCAGACTTATTCATGAAGAGAGTCCAAGCTGACGGAGACTGGACACT 1692 Query 110918 TATGTGTCCTCATCG-TTCTCCTGGTCTATCTGATGTATATGGAAAAGAGTTTGAAGACC 110976 | | || || || || | || || | || || |||| |||| || |||| | Sbjct 1693 TTTCTG-CCCCAACGAAGCCAAGGGCCTCTTCGACGTTCATGGTTAAGAATTCGAAGCAC 1751 Query 110977 TTTACGAAAAATATGAAAAAGAAGGCAAGTTTCGCAAACAAATTCCAGCTCAAGAACTTT 111036 | ||| || ||||| || |||| | | | || ||| ||||||| |||||| Sbjct 1752 TGTACACTAAGTATGAGCAATAAGGAATTGGTAGAAAGACAATGAAAGCTCAAAAACTTT 1811 Query 111037 GGTTCAAAATCCTTGAATCACAAGTTGAAACTGGAACTCCTTATATTTTGTATAAAGATC 111096 || || ||||||||||| | |||||||||||||| || || |||||||| |||| Sbjct 1812 GGGAAGCCATTATTGAATCACAAATCGAAACTGGAACTCCATACATGTTGTATAAGGATC 1871 Query 111097 ATATTAATCGCAAATCTAATCAAATGAATTTAGGAACAATTAAGTCTAGTAATTTGTGCT 111156 | || |||| || |||| ||| | ||||| || || | |||||||||| Sbjct 1872 ACGCCAACAGCAAGAGCAACCAAAAGAACCTCGGAACCATCAAAAGTTCCAATTTGTGCT 1931 Query 111157 GTG 111159 ||| Sbjct 1932 GTG 1934 >seq22165 Length=1746 Score = 114 bits (126), Expect = 3e-20 Identities = 150/207 (72%), Gaps = 3/207 (1%) Strand=Plus/Minus Query 131801 AAGAAAGCAGAATGGGCTATTAAATGGATTCAAGATGATTCCGCTAATTTTTCTACAAGA 131860 ||||| || |||||||| ||||| |||||| | ||| ||||| || || ||| Sbjct 795 AAGAAGGCTGAATGGGCCATTAAGTGGATT---GGTGAGAGCGCTAGCTTCGCTGAGAGA 739 Query 131861 CTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCTATCTTT 131920 || | ||||| ||| | || || || ||||| ||||| | ||||| | ||||| Sbjct 738 CTAATTGCTTTCGCTGCCATCGAGGGCATCTTCTTCTCAGGATCCTTCTGCTCAATCTTC 679 Query 131921 TGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCTCGAGA 131980 ||||||||||||||||| | ||||| || ||| | || || ||| | |||| || ||| Sbjct 678 TGGCTTAAGAAGCGTGGCCTCATGCCAGGTCTCACCTTCTCAAATGAGCTCATTTCAAGA 619 Query 131981 GATGAAGCATTGCATACTGAATTTGCT 132007 || |||| |||||||||| |||||| Sbjct 618 GACGAAGGTATGCATACTGACTTTGCT 592 >seq11726 Length=9537 Score = 98.7 bits (108), Expect = 2e-15 Identities = 148/208 (71%), Gaps = 12/208 (6%) Strand=Plus/Minus Query 305286 AAATTAATGATATTGTTATCAGACATTTGAATGACAATG---ATTGGGTTCTGTTCAATA 305342 ||||| |||||| ||| |||||||| || |||| || || ||||||| | Sbjct 4655 AAATTGGTGATATAGTTGAGAGACATTTA---GAAAATGGAGATGTAGTATTGTTCAACA 4599 Query 305343 GGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAAGTATT---ATCTG 305399 ||||||| | |||| | | || || |||||||||| || | ||| | ||| Sbjct 4598 GGCAACCTAGTTTACATAGAGTCTCAATTATGGCTCATAGAGCAAGAGTTATGCCATCAA 4539 Query 305400 GATTGACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGATTTTGATGGAG 305459 || || || |||| || | | | | |||||| ||||||||||| ||||||||||| | Sbjct 4538 GA---ACTTTAAGATTTAACGAATGCGTTTGTACTCCTTATAATGCAGATTTTGATGGTG 4482 Query 305460 ATGAAATGAATATGCATGTACCTCAATC 305487 ||||||||||||| ||| ||||| |||| Sbjct 4481 ATGAAATGAATATACATTTACCTTAATC 4454 >seq18988 Length=5971 Score = 93.3 bits (102), Expect = 1e-13 Identities = 121/165 (73%), Gaps = 2/165 (1%) Strand=Plus/Plus Query 305322 ATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATA 305381 |||||| ||| | || || || | || || || |||||||||||| | |||| |||| Sbjct 1635 ATGATTATGTTATCTTTAACAGATAGCCTTCTCTCCATAAAATGTCTTTAATGGGACATA 1694 Query 305382 AAGTCAAAGTATTATCTGGATTGACATTTC-GATTAAATGTAAGTGCTTGTACGCCTTAT 305440 ||| ||||| | || || | |||| || ||||| | |||| ||| || || Sbjct 1695 GAGTTAAAGTGCT-TCCCTTTTCAACTTTCAGACTAAATCTCAGTGTCACTACTCCATAC 1753 Query 305441 AATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAA 305485 ||||| ||||| ||||| ||||||||||| |||||||||||| || Sbjct 1754 AATGCTGATTTCGATGGTGATGAAATGAACATGCATGTACCTTAA 1798 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186471302776138