Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F001297925.1_202015-09-23] 22,458 sequences; 57,457,034 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq18203 132 1e-25 seq533 125 2e-23 seq14202 109 1e-18 >seq18203 Length=1365 Score = 132 bits (146), Expect = 1e-25 Identities = 151/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || |||||||| || || ||||||||||| || || |||||||| ||||| Sbjct 193 AAGACCCTCACAGGCAAGACCATCACTTTGGACGTTGAGCCCTCTGACACCATCGAAAAT 252 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| ||||| || |||||||| || || |||||||| |||||| Sbjct 253 GTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCACCCGATCAACAAAGACTCATCTTC 312 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || ||||| | ||||| ||||| || ||| |||| |||||| ||||||| || || Sbjct 313 GCTGGCAAGCAACTCGAAGACGGAAGAACCTTGTCCGACTACAACATCCAGAAGGAATCA 372 Query 206365 ACTCTTCACCTTGTTTTGAGACT 206387 || |||||| | ||| | ||||| Sbjct 373 ACCCTTCACTTGGTTCTCAGACT 395 Score = 116 bits (128), Expect = 9e-21 Identities = 139/189 (74%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 ||| || || || ||||| || ||||| ||||| || || ||| || || | || Sbjct 648 CAAGACCCTTACCGGAAAGACCATCACCTTGGACGTCGAGCCTTCAGATACCATTGAGAA 707 Query 206244 AGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||| |||||| ||||| || ||||| || || || |||||||| ||||| Sbjct 708 TGTCAAGGCAAAGATCCAAGACAAGGAAGGTATCCCACCCGATCAACAAAGACTCATCTT 767 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 |||||||||||| | |||||||| || ||| | | || |||||| |||||||||| || Sbjct 768 CGCCGGAAAGCAACTTGAAGATGGCAGAACTCTTTCAGACTACAACATCCAGAAAGAATC 827 Query 206364 TACTCTTCA 206372 ||||||||| Sbjct 828 TACTCTTCA 836 Score = 98.7 bits (108), Expect = 2e-15 Identities = 135/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || ||||| ||||| || ||||||||||| || || || ||||| | ||| Sbjct 421 AAGACCCTCACTGGAAAGACCATCACTTTGGACGTTGAGCCATCAGACACTATTGAAAAC 480 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| ||||| || ||||| ||| || || |||||||| || || Sbjct 481 GTCAAGGCCAAGATCCAAGATAAGGAAGGTATTCCCCCCGATCAACAAAGACTCATTTTT 540 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || |||||||| | ||||||||||| || | || |||||| |||| || ||||| Sbjct 541 GCTGGAAAGCAACTTGAAGATGGAAGAACCCTTAGTGACTACAACATCCAAAAGGAGTCA 600 Query 206365 ACTCTTCAC 206373 || |||||| Sbjct 601 ACCCTTCAC 609 Score = 96.9 bits (106), Expect = 8e-15 Identities = 146/208 (70%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 ||| || ||||| ||||| || ||||| | || || || || ||||| | ||| Sbjct 876 CAAGACCCTCACCGGAAAGACCATCACCCTCGATGTTGAGCCATCAGACACCATTGAAAA 935 Query 206244 AGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||| ||||| | || || ||||| || || || |||||||||||||| Sbjct 936 CGTGAAGGCCAAGATCTAGGACAAGGAAGGTATCCCACCCGATCAACAAAGACTTATCTT 995 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||| || ||||| | ||||| || || || ||| |||| |||||| |||| || ||||| Sbjct 996 CGCTGGTAAGCAACTTGAAGACGGCAGAACCTTGTCCGACTACAACATCCAAAAGGAGTC 1055 Query 206364 TACTCTTCACCTTGTTTTGAGACTTCGA 206391 ||||| ||| | || | |||||| || Sbjct 1056 AACTCTCCACTTGGTCCTCAGACTTAGA 1083 Score = 89.7 bits (98), Expect = 1e-12 Identities = 72/87 (83%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 204770 TGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 204829 ||||||||||| |||||||||| || ||||| | | ||| || |||||||| || ||| Sbjct 836 TGAAGAGTAGATTCTTTCTGGATGTTGTAGTCTGAAAGAGTTCTGCCATCTTCAAGTTGC 777 Query 204830 TTTCCGGCGAAGATAAGCCGTTGTTGA 204856 |||||||||||||| || | ||||||| Sbjct 776 TTTCCGGCGAAGATGAGTCTTTGTTGA 750 >seq533 Length=4588 Score = 125 bits (138), Expect = 2e-23 Identities = 165/228 (72%), Gaps = 3/228 (1%) Strand=Plus/Minus Query 206164 AAAATGTACCAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAA 206223 |||||||| ||| || ||| || | || || || || || ||| | || || || Sbjct 4446 AAAATGTA---GATCTTCGTCAAGACTTTGACCGGTAAGACTATTACTCTTGATGTAGAG 4390 Query 206224 AGTTCTGACACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCG 206283 |||||| || ||||| || ||| ||||||||||| |||||||| ||| || Sbjct 4389 CCTTCTGATACCATCGAAAACGTTAAGGCCAAGATTCAAGACAAAGAAGGTATTCCCCCT 4330 Query 206284 GACGCTCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGAT 206343 || || ||||| ||||| || |||||| |||||||||| || || || ||| | ||| Sbjct 4329 GATCAACAGAGACTCATCTTTGCTGGAAAGTAGTTGGAAGACGGCAGAACCTTGTCTGAT 4270 Query 206344 TACAACGTCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 206391 |||||| |||| ||||| || ||||| ||| | || ||||||||| || Sbjct 4269 TACAACATCCAAAAAGAATCAACTCTCCACTTGGTCTTGAGACTTAGA 4222 >seq14202 Length=1113 Score = 109 bits (120), Expect = 1e-18 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || ||||| || || || |||||| | || || || || || || | ||| Sbjct 213 AAGACTCTCACTGGCAAGACCATCACTCTTGATGTTGAGCCATCAGATACCATTGAAAAT 272 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| ||||| ||||| ||||| || || || ||||| || ||| Sbjct 273 GTCAAGGCTAAGATCCAAGACAAAGAGGGAATCCCACCCGATCAACAGAGACTCATTTTC 332 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || ||||||||||||||||| || || || | |||| |||||| ||||||| ||||| Sbjct 333 GCTGGAAAGCAGTTGGAAGACGGCAGAACCCTCTCCGACTACAACATCCAGAAGGAGTCA 392 Query 206365 ACTCTTCACCTTGTTTTGAGACT 206387 || |||||| | || |||||||| Sbjct 393 ACCCTTCACTTGGTCTTGAGACT 415 Score = 109 bits (120), Expect = 1e-18 Identities = 145/199 (73%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGT-AAAGCA 206252 || || || || ||||||||||| || ||| || ||||| |||| || ||||| Sbjct 678 ACCGGTAAGACTATCACTTTGGACGTCGAACCATCCGACACCATCGAGAATGTCAAAGC- 736 Query 206253 AAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAA 206312 ||||| || || || ||||| ||| || || |||||||| ||||||||||| || Sbjct 737 CAAGATCCAGGACAAGGAAGGTATTCCACCCGATCAACAAAGACTCATCTTCGCCGGTAA 796 Query 206313 GCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCA 206372 || | ||||| || || |||||| ||| |||||| |||| || ||||||||||| || Sbjct 797 ACAACTTGAAGACGGCAGAACTTTGAGCGACTACAACATCCAAAAGGAGTCTACTCTCCA 856 Query 206373 CCTTGTTTTGAGACTTCGA 206391 | | || | |||||| || Sbjct 857 CTTGGTCCTCAGACTTAGA 875 Score = 102 bits (112), Expect = 2e-16 Identities = 143/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || ||||| || ||||| | || || || || ||||| | ||| Sbjct 441 AAGACCCTTACCGGAAAGACCATCACCCTTGACGTCGAGCCATCAGACACCATTGAAAAC 500 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| |||||| ||||| |||||||| || || || ||||||||||||||| Sbjct 501 GTTAAGGCAAAGATCCAAGATAAAGAAGGTATCCCACCCGATCAACAAAGACTTATCTTC 560 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| ||||| | ||||||||||| || | | || ||||| | || ||||| ||| Sbjct 561 GCCGGCAAGCAACTTGAAGATGGAAGAACCCTTTCAGACTACAATATTCAAAAAGAATCT 620 Query 206365 ACTCTTCACCTTGTTTTGAGA 206385 || |||||| | ||| | ||| Sbjct 621 ACCCTTCACTTGGTTCTTAGA 641 Score = 86.0 bits (94), Expect = 1e-11 Identities = 79/100 (79%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 204757 TCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCC 204816 ||| | ||| | |||||| ||||| ||||| || | ||| ||||| | | || ||||| Sbjct 641 TCTAAGAACCAAGTGAAGGGTAGATTCTTTTTGAATATTGTAGTCTGAAAGGGTTCTTCC 582 Query 204817 ATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 |||||| || ||||| |||||||||||||| | ||||||| Sbjct 581 ATCTTCAAGTTGCTTGCCGGCGAAGATAAGTCTTTGTTGA 542 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181480739189818