Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F001297925.1_202015-09-23] 22,458 sequences; 57,457,034 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq14202 136 4e-27 seq18203 116 3e-21 seq2220 93.3 4e-14 >seq14202 Length=1113 Score = 136 bits (150), Expect = 4e-27 Identities = 171/230 (74%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || || || | |||||||| | ||||| | || ||||| |||| | Sbjct 426 ATGCAAATCTTCGTTAAGACCCTTACCGGAAAGACCATCACCCTTGACGTCGA-GCCATC 484 Query 25235 -GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 || || || || | || || ||| || |||||||| ||||| || |||||||| Sbjct 485 AGACACCATTGAAAACGTTAAGGCAAAGATCCAAGATAAAGAAGGTATCCCACCCGATCA 544 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAA--TGTCAGCGATTAC 25351 |||||||| || | || |||||| ||||| ||||||| |||| | |||| | ||| Sbjct 545 ACAAAGACTTATCTTCGCCGGCAAGCAACTTGAAGATGGAAGAACCCTTTCAG--ACTAC 602 Query 25352 AATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 ||||||||||||||||| ||| |||| || || | |||||||||||||| Sbjct 603 AATATTCAAAAAGAATCTACCCTTCACTTGGTTCTTAGATTGAGAGGAGG 652 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 25184 TTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAACGATACTATC 25243 || || || || || ||||| || | ||||| | || |||||| | ||| || ||| Sbjct 663 TTCGTGAAGACCTTGACCGGTAAGACTATCACTTTGGACGTCGAACCATCCGACACCATC 722 Query 25244 GAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAGCAAAGACTC 25303 ||| | || ||| || || || || || ||||| || |||||||| ||||||||| Sbjct 723 GAGAATGTCAAAGCCAAGATCCAGGACAAGGAAGGTATTCCACCCGATCAACAAAGACTC 782 Query 25304 ATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAATATTCAAAAA 25363 || | || ||| |||||||| ||||| | |||| | | ||||| ||||| || ||||| Sbjct 783 ATCTTCGCCGGTAAACAACTTGAAGACGGCAGAACTTTGAGCGACTACAACATCCAAAAG 842 Query 25364 GAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAAAATGATCA 25411 || || || | || || || | ||| | ||||| || ||||| || Sbjct 843 GAGTCTACTCTCCACTTGGTCCTCAGACTTAGAGGTGGTCAATGAACA 890 >seq18203 Length=1365 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || || || | |||||||| | ||||| | || ||||| ||| | Sbjct 634 ATGCAAATCTTCGTCAAGACCCTTACCGGAAAGACCATCACCTTGGACGTCGA-GCCTTC 692 Query 25235 -GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 ||||| || ||| | || || ||| || || || || ||||| || |||||||| Sbjct 693 AGATACCATTGAGAATGTCAAGGCAAAGATCCAAGACAAGGAAGGTATCCCACCCGATCA 752 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 ||||||||||| | || ||| || ||||| ||||||| |||| | | || ||||| Sbjct 753 ACAAAGACTCATCTTCGCCGGAAAGCAACTTGAAGATGGCAGAACTCTTTCAGACTACAA 812 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 || || |||||||| || ||||||| || | ||||||||||| || Sbjct 813 CATCCAGAAAGAATCTACTCTTCATTTGGTCCTCAGATTGAGAGGTGG 860 Score = 102 bits (112), Expect = 7e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || || || | || ||||| | ||||| | || || || |||| | Sbjct 406 ATGCAAATCTTCGTGAAGACCCTCACTGGAAAGACCATCACTTTGGACGTTGA-GCCATC 464 Query 25235 -GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 || ||||| || | || || || || ||||| || ||||| || |||||||| Sbjct 465 AGACACTATTGAAAACGTCAAGGCCAAGATCCAAGATAAGGAAGGTATTCCCCCCGATCA 524 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 ||||||||||||| | || || ||||| ||||||| |||| | || || ||||| Sbjct 525 ACAAAGACTCATTTTTGCTGGAAAGCAACTTGAAGATGGAAGAACCCTTAGTGACTACAA 584 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 || ||||| || || ||| |||| || || | ||||||||||| || Sbjct 585 CATCCAAAAGGAGTCAACCCTTCACTTGGTCCTCAGATTGAGAGGTGG 632 Score = 89.7 bits (98), Expect = 5e-13 Identities = 160/232 (69%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 25172 AACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCC 25231 ||||||||| | || || || || | || || || | ||||| | || || || || Sbjct 175 AACATGCAAATCTTCGTTAAGACCCTCACAGGCAAGACCATCACTTTGGACGTTGAGCCC 234 Query 25232 AACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGAT 25291 || || ||||| | || || || || || || || || || || |||||| Sbjct 235 TCTGACACCATCGAAAATGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCACCCGAT 294 Query 25292 CAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA--ATGTCAGCGATT 25349 || ||||||||||| | || ||||| ||||||||||| | |||| |||| ||| | Sbjct 295 CAACAAAGACTCATCTTCGCTGGCAAGCAACTCGAAGACGGAAGAACCTTGTC--CGACT 352 Query 25350 ACAATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 |||| || || || ||||| ||| |||| || || | ||| | |||||||| Sbjct 353 ACAACATCCAGAAGGAATCAACCCTTCACTTGGTTCTCAGACTCAGAGGAGG 404 >seq2220 Length=3178 Score = 93.3 bits (102), Expect = 4e-14 Identities = 154/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 25184 TTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCA-ACGATACTAT 25242 ||||| ||||| ||||| || ||| | ||||| ||| | | || || | || || || Sbjct 895 TTTGTCAAAACCTTAACAGGCAAAACTATCACAATCTATA-CTAACTCAGATGAGACCAT 837 Query 25243 CGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAGCAAAGACT 25302 || || | |||| |||||| ||||||||||| || || || || || |||||||| Sbjct 836 TGAAGAATTTAAACTTAAAATTTAAGATAAAGAGGGCATTCCACCTGACCAACAAAGACT 777 Query 25303 CATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAATATTCAAAA 25362 ||||| | || | || | ||||||| |||| | | | || ||||| ||||||| Sbjct 776 CATTTTTGCAGGTATGTAATTAGAAGATGGAAGAACTCTGGGAGACTACAACATTCAAAC 717 Query 25363 AGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGA 25402 || ||||| | ||||| || | ||| | ||||| ||| Sbjct 716 TGAGTCCACACTGCATTTGGTTCTTAGACTCAGAGGTGGA 677 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 444969450874560