Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F001297925.1_202015-09-23] 22,458 sequences; 57,457,034 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq22165 158 2e-32 >seq22165 Length=1746 Score = 158 bits (174), Expect = 2e-32 Identities = 373/552 (68%), Gaps = 20/552 (4%) Strand=Plus/Minus Query 1455731 GATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTAC 1455790 |||||||| ||| | ||||| | | || ||| ||| | || ||| | |||||| Sbjct 1185 GATAACCCAAACAGATTTGTTATCCTTCCAATCAAGTACAACGACATCTGGAAGATGTAC 1126 Query 1455791 CAAAAAGGCC-GAGGCCTCCTTT-TGGACCGCCGAGGAGGTCGACCTCGGCGCCGACACG 1455848 || | || || | || |||| |||||| | ||||| ||||||||| | | || Sbjct 1125 ---AAGGACCAGATGGCTGCTTTCTGGACCTCTGAGGAAATCGACCTCGCCACTGATGTT 1069 Query 1455849 GTCCACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTT 1455908 | |||| | || | ||| ||||| | || || |||||||||||||| | |||| Sbjct 1068 AAAGATTGGGAGAGACTCAATGACAACGAGAGACACTTTATCAAGCACGTCCTTG-CTTT 1010 Query 1455909 TTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCC---GGCCGCTTTA-TGAAAG 1455964 ||||| ||| || || ||||| ||||||||| ||| | || || ||||| Sbjct 1009 CTTCGCTGCCTCAGACGGAATCGTCAACGAGAACCTCGCCCAGAGATTCTGTACTGAAA- 951 Query 1455965 AGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCC 1456024 ||||| | ||||| ||||| | || || || ||||| || || || ||||| | Sbjct 950 ---TCCAAGTTCCAGAAGCACGCTGTTTCTATGGCTTCCAAATGATGATGGAGAACATTC 894 Query 1456025 ACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACC 1456084 |||| || || ||||| | || ||||||||| | ||| ||||| ||||||||| Sbjct 893 ACTCAGAGACTTACTCAGTACTCATCGACACCCTCATCAGTGACCCACACGAGAAGGAGT 834 Query 1456085 ACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGA 1456144 |||||| |||||| | | || || | || ||||| || ||||| || | Sbjct 833 TCCTCTTCAAAGCCATCACTAACATCCCAGTTGTAACTAAGAAGGCTGAATGGGCCATTA 774 Query 1456145 AGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCGGCTTTGCCG-CGT 1456203 ||||||| | ||| | || | ||| || ||| | || | | || || | | | Sbjct 773 AGTGGATTGGTGA-GAGCG-CTAG---CTTCGCTGAGAGACTAATTGCTTTCGCTGCCAT 719 Query 1456204 CGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCT 1456263 |||||||||||| ||||| || |||||| | ||||| ||||| |||||||| ||||| Sbjct 718 CGAGGGCATCTTCTTCTCAGGATCCTTCTGCTCAATCTTCTGGCTTAAGAAGCGTGGCCT 659 Query 1456264 CATGCCCGGTCT 1456275 |||||| ||||| Sbjct 658 CATGCCAGGTCT 647 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7175645084622196