Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F001297925.1_202015-09-23] 22,458 sequences; 57,457,034 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq1053 215 7e-51 seq14466 163 4e-35 seq22165 118 1e-21 >seq1053 Length=3228 Score = 215 bits (238), Expect = 7e-51 Identities = 505/751 (67%), Gaps = 16/751 (2%) Strand=Plus/Minus Query 69091 GCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCTCTTATTTGAACTTTCA 69150 |||||||| ||||| | || ||||| || || ||||| ||||| ||||||| || | Sbjct 1936 GCATCTGCAAATCCTTAGACACCAATTCCAATTGGTCTGTGTCTAAGATTTGAATTTCTA 1877 Query 69151 GCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTAAGATTTCGGACTACTACT 69210 ||||| |||| |||||| ||||| |||||||||||||||| ||||| | | || | || Sbjct 1876 GCTTCAGGAACAGGATAGTAATTGTTATCTATAATTTTATTTAGATT-CTTAGTAATTCT 1818 Query 69211 -TTAACCACGTCCTTTAGTTTGAGAAAATCAAAT-CGTCCAT---CTATAACA--AACAT 69263 || ||||| | || || | ||||| || | | | || ||||| || | Sbjct 1817 CTTGGTCACGTAATGTAACTTCTCATAATCATATTCTTAGGTTTCCTTTAACACGAATCT 1758 Query 69264 ATTCAGTGCTACAGATGCTAGATTACAAACTGCTACCTCATTAGAATTTGCATATTGTAT 69323 ||| | || | ||| ||||| ||||| || || || |||| | | | | | ||| | Sbjct 1757 ATTTAAAGCAATAGAAGCTAGGTTACAGACAGCCACTTCATCGGGACTGGTAAATTCGAC 1698 Query 69324 TATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTT 69383 ||||| || || || ||| || || || || || ||||||| || ||| ||| | Sbjct 1697 GATCTCAGTGCAAAGGTTAGAACTCTTAATTGTGCCAAGATTTTACTAGTTAGATTTTCT 1638 Query 69384 GTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAAT 69443 || || || || ||||| || ||| | ||||||||||| || | ||||| || || || Sbjct 1637 ATTGCAAGCATCTTTGTAGAGCATATAAGGAGTACCAGTCTCGTTTTGAGACTCTATGAT 1578 Query 69444 AGATTTCCAAACGACCCTAGCATTTATTACGGTCTTGTAACG-CTTCTCTT--TTTCATA 69500 | ||| | ||||| || | | || ||| || || | | | ||||| Sbjct 1577 TTAACCCCAGAGCCATCTAGCCTTAA---CAGTTTTGCGACCTCTACCAGTGGTCTCATA 1521 Query 69501 TTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATT 69560 | | || || || || || || ||||| | | | ||| || |||||||| Sbjct 1520 CTCGATGTAAAGTTTCTCAAACTCCTCACCCCATGTAGTAGTAAGTCCTGGGCATTCATT 1461 Query 69561 TGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAAT 69620 ||||||||||| | ||| | |||| | | ||||| | |||| || ||||| ||| | Sbjct 1460 TGGACACATCAGAGTCCAATCTTCATTTGCTTCAACTCTTCTCATGAAAAGATCTGGAGT 1401 Query 69621 CCAAAGAGC-TATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAA 69679 ||||||||| || ||| || ||||| | |||||| ||||| || || ||| ||| ||| Sbjct 1400 CCAAAGAGCGTAGAAA-AGGTCTCTAGCTCTATTCTCTTCCTTACCGTGATTCTTTCTAA 1342 Query 69680 GATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCG 69739 | | || || || ||||||| ||||||||||| | ||| | || | ||||| Sbjct 1341 GTTAAAGGAAGTCGTAGATATCAGCGTGCCATGGTTCAACATAGACAGCGAAAGCTCCCT 1282 Query 69740 GTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCG 69799 || ||| || || | ||| | |||||| || |||| ||| |||| ||| ||| | Sbjct 1281 TTCTTTTTCCACCACCTTAATCGACGTATCTTGCGGTGTCATTGAAGACCTTCAACATTG 1222 Query 69800 GAATAATACCATTAGATTTACCATTTGTTCC 69830 |||| | ||||| || | || ||||| || Sbjct 1221 GAATCAATCCATTTGAATATCCGTTTGTACC 1191 >seq14466 Length=3412 Score = 163 bits (180), Expect = 4e-35 Identities = 554/854 (65%), Gaps = 18/854 (2%) Strand=Plus/Minus Query 69345 ACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGT---CCTTGTA 69401 || |||||| || || || || | || || ||||| |||| ||||| |||| || Sbjct 1918 ACTTTTGATGGTTCCGAGGTTCTTTTGGTTGCTCTTGCTGTT---GGCGTGATCCTTATA 1862 Query 69402 AAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAACGACCCT 69461 | || | ||||| |||||||| || || ||||| ||||| | || ||||| Sbjct 1861 CAACATGTATGGAGTTCCAGTTTCGATTTGTGATTCAATAATGGCTTCCCAAAGTTTTTG 1802 Query 69462 AGCATTTATTACGGTCTTG-TAACGCTTCTCTTTT--TCATATTGTGTATATAGCCGTTC 69518 ||| || ||| ||||| || | ||| | || ||||| | || || || ||| Sbjct 1801 AGCTTTCATT---GTCTTTCTACCAATTCCTTATTGCTCATACTTAGTGTACAGTGCTTC 1745 Query 69519 GAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGACCA 69578 |||||| | || ||| || | || ||| || || || | | || ||| Sbjct 1744 GAATTCTTAACCATGAACGTCGAAGAGGCCCTTGGCTTCGTTGGGGCAGAAAAGTGTCCA 1685 Query 69579 CACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAG 69638 | | ||| | | |||| ||||| |||| || |||||||| ||||| | || | Sbjct 1684 GTCTCCGTCAGCTTGGACTCTCTTCATGAATAAGTCTGGAATCCAGAGAGCGAAGAACAA 1625 Query 69639 ATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAAT 69698 ||||| | ||| | ||| || || || ||| ||| | || | || || || | | Sbjct 1624 GTCTCTTGCTCTTTGTTCCTCTTTACCGTGATTCTTTCTTAGTTGAAGGAAATCGAAGAC 1565 Query 69699 ATCAGAATGCCATGGTTCTAGATATATCGC-CATGACTCCCGGTCGTTTATTTCCTCCCT 69757 ||| | ||||||||||| | ||||| || |||| ||| || || ||||| | Sbjct 1564 ATCTGCGTGCCATGGTTCCAAGTATATAGCGAATGA-ACCCTTTCTCTTGCCACCTCCTT 1506 Query 69758 GATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGATT 69817 | || | ||||| ||||| | ||| | ||||| ||||| || | | |||||| | Sbjct 1505 GGTCGACATATCTAGCAGTCTCATTGAAAACTCTGAGCATTGGCACGAGGCCATTACTGT 1446 Query 69818 TACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACCTA 69877 |||||| || || || ||||| || | || | || || || || ||||| | Sbjct 1445 GACCATTGGTGCCCTTGATGTAACTGCCAGTAGCTCTGATGTTGTGAACAGCCAGACCCA 1386 Query 69878 TTCCTCCTGCCATTTTAGAGATTAGAGCACAACGT--TTCAATGTGTCATATATACCCTC 69935 || || || ||| || || || | | | || || | || ||||| ||||| | Sbjct 1385 CACCACCAGCTGATTTTGAAATCAGTG--CGATGTTCTTGAGGGTATCATAGATACCGTT 1328 Query 69936 TATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGTATAGTTCC 69995 || || || |||| |||| || || || || ||||||| | | |||||| Sbjct 1327 GATTGAGTCGTCCTTCATCATAAGGAGGAAGCAACTGGACATTTATGGCTTGGGAGTTCC 1268 Query 69996 CGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGT 70055 ||||| || || ||||||| || ||||| |||||| | ||| | || ||||| || Sbjct 1267 AGCATTGAACAAAGTAGGAGTAGCATGAGTAAACCATCTGTCACTCATGAGGTTGTAAGT 1208 Query 70056 TTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAACATATG 70115 |||||| ||||| || |||||| || || || |||| | || | ||||||||| || Sbjct 1207 TTCAATGGCTGAATCGATATCCTTCTTGTGGATACCTACAGACACTCTCATCAACATGTG 1148 Query 70116 CTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGAGTTTT 70175 ||| |||| || || | ||| ||| | || || | ||| ||| | |||| || || Sbjct 1147 CTGTGGTCTCTCAACGATCTTAGAATTGACCTTTAATAAGTAGGATCTCTCCAAGGTCTT 1088 Query 70176 AAACCCAAAATAGT 70189 ||| || ||||||| Sbjct 1087 AAATCCGAAATAGT 1074 >seq22165 Length=1746 Score = 118 bits (130), Expect = 1e-21 Identities = 394/602 (65%), Gaps = 16/602 (3%) Strand=Plus/Plus Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 ||| || |||||| ||| | || || ||||| ||| | || || || || ||||| Sbjct 589 GCAAGCAAAGTCAGTATGCATACCTTCGTCTCTTGAAATGAGCTCATTTGAGAAGGTGAG 648 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAG-ATCCAGAAAAGA 39734 || ||||| || |||||||| || ||||| || || | |||| ||| |||| || |||| Sbjct 649 ACCTGGCATGAGGCCACGCTTCTTAAGCCAGAAGATTG-AGCAGAAGGATCCTGAGAAGA 707 Query 39735 AGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTG---TATCATTAT 39791 ||||||| || | || || || |||| |||||||| || | || | | ||| | Sbjct 708 AGATGCCCTCGATGGCAGCGAAAGCAATTAGTCTCTCAGCGAAGCTAGCGCTCTCACCA- 766 Query 39792 GTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCT-ATAGCA 39850 |||||||| ||||| ||||| ||||| ||||| || | |||| | || || Sbjct 767 --ATCCACTTAATGGCCCATTCAGCCTTCTTAGTTACAACTGGGA-TGTTAGTGATGGCT 823 Query 39851 TTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTA--ACAGACTAT 39908 || ||||| | | || || | || | | || || || | || || | Sbjct 824 TTGAAGAGGAACTCCTTCTCGTGTGGGTCACTGATGAGGGTGTCGATGAGTACTGA--GT 881 Query 39909 ACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAG 39968 | | ||||| || ||||| || ||| ||| || || || || ||||| | |||||| | Sbjct 882 AAGTCTCTGAGTGAATGTTCTCCATCATCATTTGGAAGCCATAGAAACAGCGTGCTTCTG 941 Query 39969 TAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAG 40028 || ||| | || | ||| ||||| | || | || || || || ||||| || | Sbjct 942 GAACTTGGATTTCAGTACAGAATCTCTGGGCGAGGTTCTCGTTGACGATTCCGTCTGAGG 1001 Query 40029 CGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCC 40088 | || || || || | || || || ||||| | | | || | | | | | | | || Sbjct 1002 CAGCGAAGAAAGCAAGGACGTGCTTGATAAAGTGTCTCTCGTTGTCATTGAGTCTCTCCC 1061 Query 40089 AGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCC-TCTGCC 40147 | || || | ||| | | | || | ||| |||| ||||| || | ||| |||| Sbjct 1062 AATCTTTAACATCAGTGGCGAGGTCGATTTCCTCAGAGGTCCAGAAAGCAGCCATCTG-G 1120 Query 40148 TTTTTGTACATGTTCCATATATCACGATATTGTATTGGAAAAATAACAAATCTATTTGGA 40207 | |||||||| ||||| || || || | ||||||| ||||||||||| ||||| Sbjct 1121 TCCTTGTACATCTTCCAGATGTCGTTGTACTTGATTGGAAGGATAACAAATCTGTTTGGG 1180 Query 40208 TT 40209 || Sbjct 1181 TT 1182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686715967527120