Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F001297925.1_202015-09-23] 22,458 sequences; 57,457,034 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq21986 87.8 1e-12 >seq21986 Length=2652 Score = 87.8 bits (96), Expect = 1e-12 Identities = 238/363 (66%), Gaps = 11/363 (3%) Strand=Plus/Minus Query 19552 CACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTCTGGTGTAAA- 19610 |||||||| || | ||||| | || |||||||| | ||||||||||| || | ||| Sbjct 1518 CACATTATCATTTTCGATGAGATCGATGCAATCTGCAGACAAAGAGGTTCAGGAGGAAAC 1459 Query 19611 --------TGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTT 19662 |||||| | || || || || || ||||||| || || | |||||||| Sbjct 1458 TCAGGCACAGGAGTAAACGAAACAGTAGTTAACTAACTCCTCTCCAAGATGGACGGTGTG 1399 Query 19663 AACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGACAGC 19722 || || || || ||| | || ||||| ||||| || ||| || | || || Sbjct 1398 GACTCCCTCAACAACATTCTCGTGATTGGTATGACAAACAGAAAAGATATGATTGATGAG 1339 Query 19723 GCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCCGATGAATGT 19782 || | | |||| ||| | ||||||||| | | |||||| | | || ||||||| | Sbjct 1338 GCTATGCTCAGACCTGGTAGATTGGAAATACATTTGGAAATTGGCCTGCCTGATGAATTT 1279 Query 19783 GGACGTGTGGAAATTTTAAACATACATACATCAAC-CATGCGACAAAATAACCTTTTAAA 19841 || | | || || |||| || || | ||| |||||| | |||||| | | | Sbjct 1278 GGTAGGAGACAGATCTTTGACATTCACAC-TAAACACATGCGTGAGAATAACTTACTCAG 1220 Query 19842 TGACGATGTAGATCTAGAAGAAATTGCAGCGGCTACCAAAAACTATAGCGGCGCAGAACT 19901 ||| ||||| || | || | | || || ||||||||| |||| || || ||| | Sbjct 1219 TGAAGATGTTGACTTTGAGAAGCTAGCTAAGGTTACCAAAAATTATACAGGAGCTGAAAT 1160 Query 19902 TGA 19904 ||| Sbjct 1159 TGA 1157 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397347213560290