Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F001297925.1_202015-09-23] 22,458 sequences; 57,457,034 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq14202 109 5e-19 seq18203 105 6e-18 >seq14202 Length=1113 Score = 109 bits (120), Expect = 5e-19 Identities = 156/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCAT-GTTGCGCTCGTCTTC 27097 ||||| || | ||||| || ||||| || ||||||||||||| ||| || ||||||| Sbjct 862 ACCAAGTGGAGAGTAGACTCCTTTTGGATGTTGTAGTCGCTCAAAGTTCTGC-CGTCTTC 804 Query 27098 GAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGC 27157 || |||||||||||| | ||||| | |||||||| || || | ||| || || || Sbjct 803 AAGTTGTTTACCGGCGAAGATGAGTCTTTGTTGATCGGGTGGAATACCTTCCTTGTCCTG 744 Query 27158 GATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTT 27217 ||||||| ||| | | || | ||||| | | ||| || || | ||| |||| || Sbjct 743 GATCTTGGCTTTGACATTCTCGATGGTGTCGGATGGTTCGACGTCCAAAGTGATAGTCTT 684 Query 27218 GCCCGTCAGAGTTTTCACAAAGATTTGCATAGCTGCT 27254 || |||| || ||||| ||||| | |||| || || Sbjct 683 ACCGGTCAAGGTCTTCACGAAGATCTACATACCTCCT 647 Score = 102 bits (112), Expect = 7e-17 Identities = 165/235 (70%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| | ||| | | ||||| || | ||||| |||||||||||||||||||| Sbjct 652 CCTCCTCTCAATCTAAGAACCAAGTGAAGGGTAGATTCTTTTTGAATATTGTAGTCTGAA 593 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | | | ||||| || || || |||||| | || || | |||||||| || || Sbjct 592 AGGGTTCTTCCATCTTCAAGTTGCTTGCCGGCGAAGATAAGTCTTTGTTGATCGGGTGGG 533 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTG-TGGCTTCAAC 27199 | ||| |||||||| |||||| || | | |||| | ||||||| ||||| | || Sbjct 532 ATACCTTCTTTATCTTGGATCTTTGCCTTAACGTTTTCAATGGTGTCTGATGGCT-CGAC 474 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCTGCT 27254 || || || || | || || || || || || || |||||||||||| || || Sbjct 473 GTCAAGGGTGATGGTCTTTCCGGTAAGGGTCTTAACGAAGATTTGCATACCTCCT 419 >seq18203 Length=1365 Score = 105 bits (116), Expect = 6e-18 Identities = 155/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| || | || || || ||||| || |||||||| || | | | | | ||||| Sbjct 614 ACCAAGTGAAGGGTTGACTCCTTTTGGATGTTGTAGTCACTAAGGGTTCTTCCATCTTCA 555 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 || || || || || ||||||| | |||||||| || || | ||| || ||||| | Sbjct 554 AGTTGCTTTCCAGCAAAAATGAGTCTTTGTTGATCGGGGGGAATACCTTCCTTATCTTGG 495 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTG-TGGCTTCAACTTCTAGAGTTATAGATTT 27217 |||||| || | | |||| | |||||||| ||||| |||| || | ||| || | || Sbjct 494 ATCTTGGCCTTGACGTTTTCAATAGTGTCTGATGGCT-CAACGTCCAAAGTGATGGTCTT 436 Query 27218 GCCCGTCAGAGTTTTCACAAAGATTTGCATAGCTGCT 27254 || || || || ||||| |||||||||||| || || Sbjct 435 TCCAGTGAGGGTCTTCACGAAGATTTGCATACCTCCT 399 Score = 98.7 bits (108), Expect = 8e-16 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| || | || || || ||||| || ||||||||| || | | | ||||||| Sbjct 1070 ACCAAGTGGAGAGTTGACTCCTTTTGGATGTTGTAGTCGGACAAGGTTCTGCCGTCTTCA 1011 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 || || ||||| ||| | || || | |||||||| || || | ||| || || || | Sbjct 1010 AGTTGCTTACCAGCGAAGATAAGTCTTTGTTGATCGGGTGGGATACCTTCCTTGTCCTAG 951 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTG-TGGCTTCAACTTCTAGAGTTATAGATTT 27217 |||||| |||| | |||| | ||||||| ||||| |||| || || || || | || Sbjct 950 ATCTTGGCCTTCACGTTTTCAATGGTGTCTGATGGCT-CAACATCGAGGGTGATGGTCTT 892 Query 27218 GCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || || || || || || |||||||||||| Sbjct 891 TCCGGTGAGGGTCTTGACGAAGATTTGCATA 861 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| || | || || || || || || ||||||||| || | | | |||||||| Sbjct 386 ACCAAGTGAAGGGTTGATTCCTTCTGGATGTTGTAGTCGGACAAGGTTCTTCCGTCTTCG 327 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 || || || || ||| | ||||| | |||||||| || || | || || || || | Sbjct 326 AGTTGCTTGCCAGCGAAGATGAGTCTTTGTTGATCGGGTGGGATTCCTTCCTTGTCTTGG 267 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 |||||| || | |||| | ||||| | || ||||| || | ||| || | ||| Sbjct 266 ATCTTGGCCTTGACATTTTCGATGGTGTCAGAGGGCTCAACGTCCAAAGTGATGGTCTTG 207 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || || || ||||||||||| Sbjct 206 CCTGTGAGGGTCTTAACGAAGATTTGCAT 178 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424818092533296