Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F001297925.1_202015-09-23] 22,458 sequences; 57,457,034 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq14466 176 6e-39 seq1053 131 2e-25 seq22165 109 7e-19 >seq14466 Length=3412 Score = 176 bits (194), Expect = 6e-39 Identities = 668/1043 (64%), Gaps = 23/1043 (2%) Strand=Plus/Minus Query 111051 CATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCG 111110 |||| || |||||||||| ||| | ||| || |||||||||| ||| || || ||| | Sbjct 2171 CATCAGCCAGACCTTGAATACCGATACCGATTGGTCTGTGTCTCATGTTTGAGTTTTTGG 2112 Query 111111 CAGTCTCAACG---GGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAA 111167 | ||| || ||||| || || | ||| |||| || ||| | || |||| | Sbjct 2111 CT---TCATCGCATGGATAGAAGTTGCCGTCGATGATTCTGTTCAAGTTAATGGTGATTT 2055 Query 111168 TCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACT 111227 | || | || |||||||| ||||| || || || | || || ||||| Sbjct 2054 GATAAGTAACTTTGTGAAGTTTCTCATAGTCGAAGACGCCA------TCCTTTACATATC 2001 Query 111228 TTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTA 111287 | || || | || || || | ||||||||||| ||||| |||||||| | Sbjct 2000 TAGGTAGAGATATGGAAGCAAGGTTGCAAACAGCTACTTCATCTGGTGAGGTGTACTCGA 1941 Query 111288 AAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCT 111347 ||| || || || |||||||| || || || || | ||||||||||| ||||| Sbjct 1940 TAATCTCACAGCACAAATTGGAACTTTTGATGGTTCCGAGGTTCTTTTGGTTGCTCTTGC 1881 Query 111348 TGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAA 111407 ||||| |||||| || | |||||| || || || || || | ||||||| | || Sbjct 1880 TGTTGGCGTGATCCTTATACAACATGTATGGAGTTCCAGTTTCGATTTGTGATTCAATAA 1821 Query 111408 TAGCCTTCCAAACATCGGCGGCTGGTACAATGGCGTTGGCCC--GTCCCTCCGCCTCGTA 111465 | || | ||||| | ||| | || || | || || ||| | ||| || Sbjct 1820 TGGCTTCCCAAAGTTTTTGAGCT--TTCATTGTCTTTCTACCAATTCCTTATTGCTCATA 1763 Query 111466 CTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTC 111525 ||| ||||| || ||||| || || | ||| ||||| |||| || || | || Sbjct 1762 CTTAGTGTACAGTGCTTCGAATTCTTAACCATGAACGTCGAAGAGGCCCTTGGCTTCGTT 1703 Query 111526 TGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAAT 111585 || |||||||| | ||| | || | | | || | ||||||||| | ||||||||| Sbjct 1702 GGGGCAGAAAAGTGTCCAGTCTCCGTCAGCTTGGACTCTCTTCATGAATAAGTCTGGAAT 1643 Query 111586 CCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAA 111645 ||| || | | || | ||||| | || || | ||| || || || || Sbjct 1642 CCAGAGAGCGAAGAACAAGTCTCTTGCTCTTTGTTCCTCTTTACCGTGATTCTTTCTTAG 1583 Query 111646 CTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTT 111705 | |||||| || | || ||| ||||||||||| || | || | |||| || ||||| Sbjct 1582 TTGAAGGAAATCGAAGACATCTGCGTGCCATGGTTCCAAGTATATAGCGAATGAACCCTT 1523 Query 111706 TC---GACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGG 111762 || | || |||| | ||||| | || || | || || || | |||||||| Sbjct 1522 TCTCTTGCCACCTCCTTGGTCGACATATCTAGCAGTCTCATTGAAAACTCTGAGCATTGG 1463 Query 111763 AATAATACCAT--CTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACA 111820 | | |||| ||| |||||||| || ||| || | | | ||||| | Sbjct 1462 CACGAGGCCATTACTG--TGACCATTGGTGCCCTTGATGTAACTGCCAGTAGCTCTGATG 1405 Query 111821 TCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGA 111880 | || | || || | ||| ||||| | ||||| || | || | | | || Sbjct 1404 TTGTGAACAGCCAGACCCACACCACCAGCTGATTTTGAAATCAGTGCGATGTTCTTGAGG 1345 Query 111881 GTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATC 111940 || |||||||||||||||||||||| ||||| | | ||||||||||||||||| Sbjct 1344 GTATCATAGATACCGTTGATTGAGTCGTCCTTCATCATAAGGAGGAAGCAACTGGACATT 1285 Query 111941 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG 112000 | || | || || ||||||||||| | || || || || ||| | ||| | | Sbjct 1284 TATGGCTTGGGAGTTCCAGCATTGAACAAAGTAGGAGTAGCATGAGTAAACCATCTGTCA 1225 Query 112001 GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCG 112060 ||| || ||| || || | | | ||||| || || | | |||||| || | | Sbjct 1224 CTCATGAGGTTGTAAGTTTCAATGGCTGAATCGATATCCTTCTTGTGGATACCTACAGAC 1165 Query 112061 ACCCGCATGAACATGTACTGTGG 112083 || | ||| ||||||| |||||| Sbjct 1164 ACTCTCATCAACATGTGCTGTGG 1142 >seq1053 Length=3228 Score = 131 bits (144), Expect = 2e-25 Identities = 379/572 (66%), Gaps = 21/572 (4%) Strand=Plus/Minus Query 111482 TCAAACTCCTCACCCACCGCGTCGGAG--AGACCTGGTGCCTTG-TCTGGACAGAAAAGA 111538 ||||||||||||||| | || | || || ||||| || || | |||||| | ||| Sbjct 1504 TCAAACTCCTCACCC--CATGTAGTAGTAAGTCCTGG-GCATTCATTTGGACACATCAGA 1448 Query 111539 GACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAA 111598 | ||| | || | | ||||| | |||||||||| |||||| |||| || | | Sbjct 1447 GTCCAATCTTCATTTGCTTCAACTCTTCTCATGAAAAGATCTGGAGTCCAAAGAGCGTAG 1388 Query 111599 AAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCC 111658 || || |||||| | | |||||| | ||| || || || | | |||||| || Sbjct 1387 AAAAGGTCTCTAGCTCTATTCTCTTCCTTACCGTGATTCTTTCTAAGTTAAAGGAAGTCG 1328 Query 111659 ATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTC---GACGCCCA 111715 |||||| ||||||||||| |||| |||||| |||| || |||||||| | ||| Sbjct 1327 TAGATATCAGCGTGCCATGGTTCAACATAGACAGCGAAAGCTCCCTTTCTTTTTCCACCA 1268 Query 111716 GCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCT 111775 ||| || || || | || ||| | || || || | ||||||||| | |||| | Sbjct 1267 CCTTAATCGACGTATCTTGCGGTGTCATTGAAGACCTTCAACATTGGAATCAATCCATTT 1208 Query 111776 GATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGA-TGTG-CA 111833 || | || ||||| || | || || | | ||||| ||||| ||| || || Sbjct 1207 GAATATCCGTTTGTACCTCTGATGTAGGAGTCAGCAGCTCTAACATC--GGACACTGACA 1150 Query 111834 TCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATAC 111893 || ||||| ||||| ||||||||| ||| | | | |||| || |||||| Sbjct 1149 CTCCGATACCACCAGCAGCCTTTGAGATAATAGCAATTTATTTTAAAGTTTCAAAGATAC 1090 Query 111894 CGTTGATTGAGTCCTCCTT----GTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTT 111949 | | || ||||| || || ||| || | ||| ||| |||| ||||| ||| || Sbjct 1089 CATCAATGGAGTCTTCTTTTACAGTTAGCAAGAAGCAAG-AACT---CATCTATGGTTTT 1034 Query 111950 GGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGACATCTTG 112009 ||||| |||| || || || || || || || ||| | ||| ||| |||| Sbjct 1033 GGTGTTCCAGAGTTAAACAGAGTAGGAGTGGCATGAGTAAACCACAGTTGACTCATCAAA 974 Query 112010 TCGTATGTCTCCAAGACAGAATCAATGTCTTC 112041 ||||| ||||| || | || |||| |||||| Sbjct 973 TCGTAAGTCTCGAACGCTGACTCAAGGTCTTC 942 >seq22165 Length=1746 Score = 109 bits (120), Expect = 7e-19 Identities = 140/190 (74%), Gaps = 5/190 (3%) Strand=Plus/Plus Query 122676 ACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCCCGCTT 122735 ||| || |||| ||||| || |||||||||||| |||||||||||||| || ||||| Sbjct 610 ACCTTCGTCTCTTGAAATGAGCTCATTTGAGAAGGTGAGACCTGGCATGAGGCCACGCTT 669 Query 122736 CTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAA 122795 ||| | ||| | || | |||||| || || ||||||||||| ||||| | || || Sbjct 670 CTTAAGCCAGAAGATTGAGCAGAAGGATCCTGAGAAGAAGATGCCCTCGATGGCAGCGAA 729 Query 122796 CGCAAAAAGGCGTTCGGCGAAG-GAGCGAGACTTTGCATCAAACCATTTCATTGCCCATT 122854 |||| || | || |||||| |||| || | || ||| ||| || || ||||||| Sbjct 730 AGCAATTAGTCTCTCAGCGAAGCTAGCG---CTCT-CACCAATCCACTTAATGGCCCATT 785 Query 122855 TCGCCTTCTT 122864 |||||||| Sbjct 786 CAGCCTTCTT 795 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627855695716800