Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F001297925.1_202015-09-23] 22,458 sequences; 57,457,034 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq1053 187 3e-42 seq14466 168 8e-37 seq22165 116 4e-21 >seq1053 Length=3228 Score = 187 bits (206), Expect = 3e-42 Identities = 730/1125 (65%), Gaps = 47/1125 (4%) Strand=Plus/Plus Query 104138 AGAGACTACGACTTTGGTTATTTTGGTCTCAAAACCCTTGAGAAGAGCT-ATCTTC--AA 104194 ||||||||| ||| || ||||||||| ||| ||| | || ||||||| | |||| || Sbjct 816 AGAGACTACAACTATGACTATTTTGGTTTCAGAACATTGGA-AAGAGCTTACCTTCTTAA 874 Query 104195 CGGCTCGATGGTGTCTTGATG---GAAACCCCACAGTACATGTTCATGCGCGTGGCCATC 104251 | |||| | || || | ||||| ||||| | ||| | || || Sbjct 875 AG-----ATGGCAACCAAATCCTTGAGAGACCACAACACATGCTTATGAGAGTAAGTATT 929 Query 104252 GGTATTCATGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGT 104311 ||||||||| |||||| |||| || | || ||||| ||||| |||| ||| Sbjct 930 GGTATTCATAAAGAAGACCTTGAGTCAGCGTTCGAGACTTACGATTTGATGAGTCAACTG 989 Query 104312 ATGTTCATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCCCAAATGTCC 104371 ||| | ||| || || || || || || || |||| ||||||| ||| | ||| Sbjct 990 TGGTTTACTCATGCCACTCCTACTCTGTTTAACTCTGGAACACCAAAACCATAGATG--- 1046 Query 104372 AGTTGCTTCCTTATCGCCAAC----AAGGAGGACTCAATCAACGGTATCTATGGAACTCT 104427 |||| ||| ||| | || ||| || || ||||| || | ||||||| || |||| | Sbjct 1047 AGTT-CTTGCTTCTTGCTAACTGTAAAAGAAGACTCCATTGATGGTATCTTTGAAACTTT 1105 Query 104428 TACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGGGGTATTGGGATG-CACA-TCCATGAT 104485 | | ||| ||||||||| ||||| ||||| || || || ||| ||| Sbjct 1106 AAAATAAATTGCTATTATCTCAAAGGCTGCTGGTGGTATCGGAGTGTCAGTGTCC--GAT 1163 Query 104486 GTGAGAGCCAATAAATCTCGTATTCGGGGGACAAATGGTCAATCAGATGGTATTATTCCA 104545 || ||||| | | || || | || ||||| || | ||| |||| | |||||| Sbjct 1164 GTTAGAGCTGCTGACTCCTACATCAGAGGTACAAACGGATATTCAAATGGATTGATTCCA 1223 Query 104546 ATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAATCAAGCTGGGCGTC---GAAAG 104602 ||| | || || || | ||| || | || || || ||| ||| | ||||| Sbjct 1224 ATGTTGAAGGTCTTCAATGACACCGCAAGATACGTCGATTAAGGTGGTGGAAAAAGAAAG 1283 Query 104603 GGATCTATCGCAGTCTATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTG 104662 ||| || |||| |||||| |||| ||||||||||| |||||| || |||||| | | Sbjct 1284 GGAGCTTTCGCTGTCTATGTTGAACCATGGCACGCTGATATCTACGACTTCCTTTAACTT 1343 Query 104663 CGTCTCAACCAAGGTGACGAGGAGGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATT 104722 | || || ||| | || ||| | | || || |||| |||||| |||| | Sbjct 1344 AGAAAGAATCACGGTAAGGAAGAGAATAGAGCTAGAGACCTTTTCTACGCTCTTTGGACT 1403 Query 104723 CCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGA- 104781 |||||||| ||||||| |||||||| | | || ||||| |||| | |||||| | Sbjct 1404 CCAGATCTTTTCATGAGAAGAGTTGAAGCAAATGAAGATTGGACTCTGATGTGTCCAAAT 1463 Query 104782 CAAGGCACCTGGTCTCTCCGATGCCGTGGGTGAGGAGTTTGAAGCCCTTTACACAAAGTA 104841 || || || || || | | | ||||||||||||||| ||||||| |||| Sbjct 1464 GAATGC-CCAGGACTTACTACTACATGGGGTGAGGAGTTTGAGAAACTTTACATCGAGTA 1522 Query 104842 CGA-------GGAAGAAGGTCGGGCGACTGCGACGGTGCCAGCTGCCGATGTGTGGAAAG 104894 || || || |||||| |||| | | || || || | | || || | Sbjct 1523 TGAGACCACTGGTAG-AGGTCGCAAAACTGTTAAG--GCTAGATG--GCTCTGGGGTTA- 1576 Query 104895 CTATTCTCAAGTCTCAAACCGAGACTGGTACACCATACATGCTTTACAAAGACGCCTGTA 104954 || | ||||||||| |||||||||||| || || ||||| |||||||| || || | Sbjct 1577 -AATCATAGAGTCTCAAAACGAGACTGGTACTCCTTATATGCTCTACAAAGATGCTTGCA 1635 Query 104955 ACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTCTGTACAGAAA 105014 | ||| ||| | | ||| | || || |||||||| || || || || || | Sbjct 1636 ATAGAAAATCTAACTAGTAAAATCTTGGCACAATTAAGAGTTCTAACCTTTGCACTGAGA 1695 Query 105015 TCTTGGAATTTA-CAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTC 105073 || | ||||||| ||| | ||||| |||||| |||||||| || || || ||| | Sbjct 1696 TCGTCGAATTTACCAGTC-CCGATGAAGTGGCTGTCTGTAACCTAGCTTCTATTGCTTTA 1754 Query 105074 CCCAAGTATGTGGATCCAGAGA-CAAAGACATTTGATTATGAAAAACTCCACGAAGTTAC 105132 | | ||| || | | |||| || ||||||||| || | || | || || Sbjct 1755 AATAGATTCGTGTTAAAGGAAACCTAAGA-ATATGATTATGAGAAGTTACATTACGTGAC 1813 Query 105133 GAAAACTGTCACCAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGTTGAGAC 105192 || | | || || || ||||| | | |||| |||| |||| || || ||| Sbjct 1814 CAAGAGAATTACTAAGAATCTAAATAAAATTATAGATAACAATTACTATCCTGTTCCTGA 1873 Query 105193 TGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCTCGGTGT 105237 ||| | || || ||| | |||||| | |||||||| | ||||| Sbjct 1874 AGCTAGAAATTCAAATCTTAGACACAGACCAATTGGAATTGGTGT 1918 >seq14466 Length=3412 Score = 168 bits (186), Expect = 8e-37 Identities = 680/1060 (64%), Gaps = 37/1060 (3%) Strand=Plus/Plus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 |||||| ||||||| ||| | ||| | | ||||| || | | || || ||||| | | Sbjct 1142 CCACAGCACATGTTGATGAGAGTGTCTGTAGGTATCCACAAGAAGGATATCGATTCAGCC 1201 Query 104282 TTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTTC 104341 | || || ||| || ||| | | ||| | ||| || || || || | ||| Sbjct 1202 ATTGAAACTTACAACCTCATGAGTGACAGATGGTTTACTCATGCTACTCCTACTTTGTTC 1261 Query 104342 AATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGAC 104401 |||||||| || || | || ||||||||||||||||||| | | ||||| ||| Sbjct 1262 AATGCTGGAACTCCCAAGCCATAAATGTCCAGTTGCTTCCTCCTTATGATGAAGGACGAC 1321 Query 104402 TCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGG 104461 ||||||||||||||||||| || || | | | || | || ||||| | ||||| Sbjct 1322 TCAATCAACGGTATCTATGATACCCTCAAGAACATCGCACTGATTTCAAAATCAGCTGGT 1381 Query 104462 GGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAAT 104521 ||| | || || | || | | ||||| | | | || ||| || ||| Sbjct 1382 GGTGTGGGTCTGGCTGTTCACAACATCAGAGCTACTGGCAGTTACATCAAGGGCACCAAT 1441 Query 104522 GGTCAATCAG--ATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATG 104579 ||||| ||| |||| | | |||||||| | || || || | || || | |||| Sbjct 1442 GGTCA--CAGTAATGGCCTCGTGCCAATGCTCAGAGTTTTCAATGAGACTGCTAGATATG 1499 Query 104580 TAAATCA---AGCTGGGCGTCGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACG 104636 | | || || ||| ||||||| || |||| | || | || |||||||||| Sbjct 1500 TCGACCAAGGAGGTGGCAAGAGAAAGGGTTCATTCGCTATATACTTGGAACCATGGCACG 1559 Query 104637 CGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTGC- 104695 | ||| || | || |||||| | | | || || ||| | ||||| | | || Sbjct 1560 CAGATGTCTTCGATTTCCTTCAACTAAGAAAGAATCACGGTAAAGAGGA-ACAAAGAGCA 1618 Query 104696 CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGT 104755 | || | |||| |||||||||||||||||| | |||||||||||||| | | Sbjct 1619 AGAGACTTGTTCTTCGCTCTCTGGATTCCAGACTTATTCATGAAGAGAGTCCAAGCTGAC 1678 Query 104756 GGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGGTGAG 104815 || | ||| | || || || || || | || || |||| ||| | ||| | Sbjct 1679 GGAGACTGGACACTTTTCTGCCCCAACGAAGCCAAGGGCCTCTTCGACGTTCATGGTTAA 1738 Query 104816 GAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGG--TCGGGCGACTGCGACGGTGC 104873 || || ||||| || ||||| ||||| ||| || |||| | || || ||| || Sbjct 1739 GAATTCGAAGCACTGTACACTAAGTATGAGCAATAAGGAATTGGTAGA--AAGACAATGA 1796 Query 104874 CAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATACA 104933 |||| | | ||| |||| ||| | | || |||| ||| ||||| || ||||||| Sbjct 1797 AAGCTCAAAAACTTTGGGAAGCCATTATTGAATCACAAATCGAAACTGGAACTCCATACA 1856 Query 104934 TGCTTTACAAAG---ACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCA 104990 || | || || | ||||| ||| ||||| || |||||||| | || |||| Sbjct 1857 TGTTGTATAAGGATCACGCC---AACAGCAAGAGCAACCAAAAGAACCTCGGAACCATCA 1913 Query 104991 AGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGT 105050 | ||||||||| | || || || | || | || |||||| ||||| | Sbjct 1914 AAAGTTCCAATTTGTGCTGTGAGATTATCGAGTACACCTCACCAGATGAAGTAGCTGTTT 1973 Query 105051 GTAACCTCGCATCAATCGCTCTCCCCAAGTATGT---GGATCCAGAGACAAAGACATTTG 105107 | ||||| || || || |||| || | ||||| |||| | | | || | Sbjct 1974 GCAACCTTGCTTCCATATCTCTACCTAGATATGTAAAGGAT--GGCGTC-------TTCG 2024 Query 105108 ATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTG 105167 | ||||| ||||| ||| ||||||| | |||||| ||| | |||||| | || | Sbjct 2025 ACTATGAGAAACTTCACAAAGTTACTTATCAAATCACCATTAACTTGAACAGAATCATCG 2084 Query 105168 ATAGAAATTTTTACCC---CGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAA 105224 | | || || || || || ||| || || || || ||||||||| | |||| Sbjct 2085 ACGGCAACTTCTATCCATGCGATGA---AGCCAAAAACTCAAACATGAGACACAGACCAA 2141 Query 105225 TTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCT 105264 | ||| ||||| |||| ||||| || |||| | |||| || Sbjct 2142 TCGGTATCGGTATTCAAGGTCTGGCTGATGCACTCATGCT 2181 >seq22165 Length=1746 Score = 116 bits (128), Expect = 4e-21 Identities = 173/238 (73%), Gaps = 7/238 (3%) Strand=Plus/Minus Query 94702 GAGAAGAAGCAGCTCTTTGAAGCCATC-CAAACAGTTCCGTGTATTCAA-AAGAAAGCGG 94759 |||||| || ||||| |||||||| | |||| ||| || | | ||||| || | Sbjct 843 GAGAAGGAGTTCCTCTTCAAAGCCATCACTAACA--TCCCAGTTGTAACTAAGAAGGCTG 786 Query 94760 ATTGGGCTATGAAGTGGTTTGATACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCAT 94819 | ||||| || |||||| ||| | | || ||| | ||| |||||| |||| | || | Sbjct 785 AATGGGCCATTAAGTGGATTGGTG-AGAG-CGC-TAGCTTCGCTGAGAGACTAATTGCTT 729 Query 94820 TTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGA 94879 | || | ||||| ||||||||||| || ||||||||| | || | ||||| |||| Sbjct 728 TCGCTGCCATCGAGGGCATCTTCTTCTCAGGATCCTTCTGCTCAATCTTCTGGCTTAAGA 669 Query 94880 AGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGG 94937 |||| || ||||||||||||||| |||||| || ||||| || || | ||||| || Sbjct 668 AGCGTGGCCTCATGCCAGGTCTCACCTTCTCAAATGAGCTCATTTCAAGAGACGAAGG 611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583097064111920